RNAcentral: The non-coding RNA sequence database

Javascript is currently disabled or is not supported by this browser. Please enable JavaScript for full functionality.

RNAcentral: The non-coding RNA sequence database

a comprehensive ncRNA sequence collection representing all ncRNA types from a broad range of organisms

More about RNAcentral →

Getting started

Text search

Search by gene, species, ncRNA type, accession, or any other keyword

Browse sequences

Sequence search

Search for similar sequences -
now with facets and 2D diagrams

Search by sequence

Genome browser

Explore RNAcentral sequences in your favorite genome locations

Explore genomes

Secondary structures

RNAcentral contains over 22 million secondary structures displayed using standard layouts, including SSU and LSU rRNA, and over 2,600 Rfam families. Learn more →

5S rRNA from Thermus thermophilus

5S rRNA from Thermus thermophilus secondary structure diagram

Human small Cajal body-specific RNA 13 (SCARNA13)

Human small Cajal body-specific RNA 13 (SCARNA13) secondary structure diagram

18S rRNA from Leishmania donovani

18S rRNA from Leishmania donovani secondary structure diagram

Human small nucleolar RNA 7SL

Human small nucleolar RNA 7SL secondary structure diagram

Human C/D box 3A (SNORD3A)

Human C/D box 3A (SNORD3A) secondary structure diagram

Human mitochondrially encoded 12S RNA (MT-RNR1)

Human mitochondrially encoded 12S RNA (MT-RNR1) secondary structure diagram

Chimpanzee LSU rRNA

Chimpanzee LSU rRNA secondary structure diagram

Parcubacteria LOOT RNA

Parcubacteria LOOT RNA secondary structure diagram

Escherichia coli 5S rRNA

Escherichia coli 5S rRNA secondary structure diagram

Human 5S rRNA

Human 5S rRNA secondary structure diagram

Pig 12S rRNA

Pig 12S rRNA secondary structure diagram

Lysine riboswitch RNA from Thermotoga maritima

Lysine riboswitch RNA from Thermotoga maritima secondary structure diagram

T. pyriformis LSU rRNA

T. pyriformis LSU rRNA secondary structure diagram

Human FGF-2 internal ribosome entry site

Human FGF-2 internal ribosome entry site secondary structure diagram

Fly 18S rRNA

Fly 18S rRNA secondary structure diagram

Human variant U1 small nuclear 1 (RNVU1-1)

Human variant U1 small nuclear 1 (RNVU1-1) secondary structure diagram

Human LSU rRNA

Human LSU rRNA secondary structure diagram

S. pombe LSU rRNA

S. pombe LSU rRNA secondary structure diagram

Yeast 18S rRNA

Yeast 18S rRNA secondary structure diagram

Mouse SSU rRNA

Mouse SSU rRNA secondary structure diagram

Human 18S ribosomal N2 (RNA18SN2-4)

Human 18S ribosomal N2 (RNA18SN2-4) secondary structure diagram

Plasmodium vivax SSU rRNA

Plasmodium vivax SSU rRNA secondary structure diagram

ykoK riboswitch from Bacillus subtilis

ykoK riboswitch from Bacillus subtilis secondary structure diagram

Explore secondary structures Visualise your sequence with R2DT

Data from 47 databases

16,719 sequences
Example

294,794 sequences
Example

1,151 sequences
Example

7,542 sequences
Example
Updated

1,970 sequences
Example

149 sequences
Example

1.0 million sequences
Example

47,355 sequences
Example
Updated

319 sequences
Example

1,291 sequences
Example

4,779 sequences
Example

8,299 sequences
Example
Updated

1,060 sequences
Example

212 sequences
Example
Updated

234,669 sequences
Example

935 sequences
Example

77,038 sequences
Example

680 sequences
Example

1.2 million sequences
Example

2,501 sequences
Example

26,115 sequences
Example
Updated

36 sequences
Example

1.9 million sequences
Example

62 sequences
Example

2,857 sequences
Example

3,318 sequences
Example
Updated

126,876 sequences
Example

64,857 sequences
Example

503 sequences
Example

472,795 sequences
Example
Updated

367 sequences
Example

9,487 sequences
Example

4,203 sequences
Example
Updated

92,841 sequences
Example
Updated

12.1 million sequences
Example
Updated

14,968 sequences
Example

375 sequences
Example
Updated

11,124 sequences
Example

102,855 sequences
Example
Updated

200,827 sequences
Example

4,406 sequences
Example

44,464 sequences
Example
Updated

18,901 sequences
Example

5,261 sequences
Example

75,036 sequences
Example

8.2 million sequences
Example

65,389 sequences
Example

News

Tweets

Follow Tweets by RNAcentral

Announcements

Read RNAcentral paper in Current Protocols in Bioinformatics

Citing RNAcentral

If you use RNAcentral, please cite our latest paper:

Featured use cases

{{ randomExamples[0].category_header }}

{{ randomExamples[0].caption }}

{{ randomExamples[1].category_header }}

{{ randomExamples[1].caption }}

{{ randomExamples[2].category_header }}

{{ randomExamples[2].caption }}

More use cases →