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Homo sapiens (human) TSIX transcript, XIST antisense RNA URS000025784F_9606

  • 37,027 nucleotides
  • 8 databases (Ensembl, Ensembl/GENCODE, GeneCards, HGNC, LNCipedia, MalaCards, NONCODE, RefSeq)
  • Found in 1 species
  • lncRNA

Automated summary: This lncRNA sequence is 37,027 nucleotides long and is found in Homo sapiens. Annotated by 8 databases (LNCipedia, Ensembl, GeneCards, HGNC, MalaCards, NONCODE, RefSeq, Ensembl/GENCODE). Described in 15 papers. Matches 1 Rfam family (XIST_intron, RF02266). Homo sapiens (human) TSIX transcript, XIST antisense RNA sequence is a product of TSIX, NONHSAG054779.2 genes. Found in the human reference genome.

Targeting miRNAs 17 total

According to LncBase, this RNA is targeted by the following miRNAs:

Genome locations

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This sequence is found in {{ locations.length }} genome :

Go to location Chromosome Start End Strand Ensembl UCSC Sequence identity
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  • {{ location.chromosome }} {{ location.start | number }} {{ location.end | number }} {{ location.strand == "1" ? "forward" : "reverse" }} {{ location.ensembl_division.name.replace('EnsemblVertebrates', 'Ensembl') }} UCSC 100% {{ location.identity * 100 | number:0 }}%

    No genome locations found for this sequence. Learn more →

    Gene Ontology annotations

    Sequence

    Sequence features are shown above as colored rectangles. Zoom in and click to view details, or Reset

    UAAAAAUGUAAAAGAUCAGCUGGGUGUGGUGGCUCACACCUGUAAUCCCAGCACUUUGGGAGGCUGAGGUGGGUGGAUCACGAGAUCAGGAAUUCAAGACCAGCGUGGCCAACAUGGUGAAACCCUGUCUCUACUAAAAAUACAAAAAUUAGCUGAGCAUGAUGGUGCACACUGUAAUCCCAGCUACUCAGCAGGCUGUGGCAGGAGAAUCACUUGAACCCAGGAGGUAGAGGUUGCAGUGAGCCGAGAUCGCGCCAGUGCACUCCAUCCUGGGCAACAGAACAAGACUCCAACUCGAAAAAAAAAUCAAUAAAAAUGUAAAAGAUCAUUCUUAGCUUGGAGGCUAUAAAAAAGGAUGCAGCAUGUCAGAUUUGGCCCAUUAGCUGCAGUUUCCUGACCUCUAUCUACCUCAAUUGGUUCUUUACUUACAUUACAUGGAAAGUGCAAACUUGGAUGGCUUCAAUGUCUGGCUUCUUUUAUUUAUUUAUUUAUUUAUUUAUUUAUUUAUUUAUUUAUUUUUUGAGACGGGGUCUCGCUGUGGCCCGGGCUGGAGUGCAGUGGCACGAUCUCUGCUCACUGCAAGCUCCACCUCCUGGGUUCACACCAUUCUCCUGCCUCAGCCUCCCGAAUAGCUGGAACUACAGGUGCACGCCACCACGCUUGGCUAAUUUUUUAUAUUUUUAGUAGAGACGGGGUUUCACUGUGUUAGUUAGCCAGGAUGGUCUCGAUCUCCUGACCUCAUGAUCCGCCCAUCUCGGCCUCCCAAAGUGCUGGGAUUACAGGUGUGAGCCACCGUGCCCGGCUGGCUGGCUUCUUUUUACCCUUCACAUCUGGCUUUAAAUACUACCUUUUCACAGAUUUCUUCUCUAAUCACUCUUUCUAAAGUAAAUAUGCUGUUUUUCAUUAUUAGUCAUUGCAUCCUAUUUCUUUCCCUUUAAUUUUCUUAUCACAAUGUAUAAUUAUAUGUUUUUUUUUUUUUUUGGUUAUUGCCUGUCUCCCUCAAUAGAUCAUAAGUUCCAUUUGAUAAGGUACAAUGUCUGUUGGUUUAUUAGCCAGUGCCUAACACUACCAUUUAAUAUGUAUUCAAUGAAUAUUUGUUAAAUGUAUUGAUUGAAUUUAAAGUGACUACUCAGCCUACUUCUGCCCCUUGGAGCUUGGAUUGUUUCUUCAAAGGUAUUGAUCCUUUUGACUAUUUUAAUUAUGAAUUCACUAAAGACAUCUGGAAGGCUUAUUGUGUCAAGCAGUGCCAAAUCCAUGGCUUGAUGAACCUAGAUCCAUCCCCUUCCCCUUUCCAUAUCACAGAUGACAACUUGAUGGUUGGCCUAUGACUUGUAAAAGUUGUCAUAUUUGAAUUCUGAAAUUUCUCUAAUUUUCUUGGGAAGCAGAAAGGAAAAAUUAGUAGUUGGCCUCAAAGGGACAGUUGAAUUUCACAUAUAAUGAGCAAAGUAGUGUGAGGAAGAGAGGAGGGCCUUUUCUUUUGAGGUCAUAACUAAAAGUUAGGUGAGCAAAUGCCAUAAGCAUGAAAAUAGCAAACCAAGCUUCUUGGUUUCUAUCCAAAGGCUUUGUUGGGAAAAGUAUCAAAGUGUGUUCAUUUGUUAUGUAAUAUAUAAGGUAGAGAACCCAAUUUGAAGGAGGUGGAAUAACUUUCCAAAAUACUUAUGGCUAAAUUCUCAGUUGAUCUUGGAAUAAGAUUCAAGAAUCCAAAUGCACCCUUCUUUGUUAUCUUGCUAGAAAACAUGCUGGGCAUGGUGGCUCAUGCCUGUAAUCCCAACACGUUGAGAGGCCGAGGUGGGCAGAUCACGAGAUCAGGAGUUGGAGACCAGCCUGAUCAACAUGGUGAAGCCCCGUCUCUACUAAAAAUACAAAAAUUAGCCAGACAUAGUGGCACGCACCUAUAAUCCGUGCUACUCAGGAGGUAGGCAGGAGAAUUGCUGGAACCCGGGAGGUGGAGUUUGCAGUGAGCCAAGAUCACACCACUGCAAUCCAGCCUGGGUGACAGAGCGAGACUCUGUCUCAAAAAAAAAAGAAAAGAAAAAAGAAAAGAAAGAAAAAAGGGAAGGGAAGGAAAGGGGGGAGGGGAGGGAAGGGAAGGGAAGGGAAGGUAAGGGAAGGGAAGGGAAGGGAAGGGAAAAGGGAAAACAAUGUGCUUUUACCCACAGCUGAUAAGCUUUUCUAAUUGUCUACCUUUGGGUUAAACUUUAUCAUUGAGUGUUUUUAUCCCAUUAUGAAAGAAUUAAGGUUUGAAGGACUGAGGUAAGGGUGGAUAUUUACUCUUAAUUGAGUAGCUUAACCAAGUCAAGCCACAGAUUAGCUGAAGCCAAAAAGCACUGGCAGCAUUUGAAAUAACUGAGAACAUAUUAUACUUAACACUUUAUUAUCUAAGAGAGGCACUUGAAGUUGAGACCUAGAAAUUUGAUUCUGGGUUCUUUGUUUCUAAGGGGCAGGGUGAACCCAGCUAUAGCAUUCACAGAUGCUAUAGAAUUAUAUAUAUUCUAUAUAUAAUUAUAUAUAUUACAUUCAUAUUAAUAUAUGUUAAUAUAUUCUAUAUUAUUCAUAUAGAAUUCACAGAUAAUCCAAGUGCUUUUUUAAUACAUUGAUACCAAAUCUCUCCUGCUCUCAAAAAAAAAAGCCCAAGGCAAAAAUUUUUGAUUAGCCUGUAUCCGCAAAUUCAUAGUGCAUGGCAUGAUGGGUACUCUACAUCCCUCCUCCUAUUGCACUCACUGUGCCCAGAUGAACCUAAAGUCACCAGUAAUAGUGCUAAUGUAGUAAUGGGCCCAAGCUUCAAAAGAAGGAAAAUUAGUAUUCAGUAUUUAAAUGUGGGAAAGAGGAAGAAUAUGGAAAUUAUCAAUUUUAUAAUACCUAUACAUAUUCUUACCUGCAUUAAUGUGAAUAGACAUCAAUGAUAAACAGAAUAAUGCCCCAUAAAGAUGUCUACACUGUAAUCUCCAAAACUUAUAACUAUACUAUAUCACAUGGCAAGAGGGAAUUAAGGUUACUAAUCAGCUGACCUUGAGAUGGGAGAUUCUCCUGGUUUGUAUGGGUGGGCCCAAUGUAAUCACAGGGUCCUUAUAAAUGGAAAAGGCAGACAGGAGAUUCAGUGUCAGACUGAUACAAUGAGGGAAAGACUACCAGCAGUUGAUGGCUUUGAAGAUAGAAGAAGGGGGCCAUGAGCCAAGAAAUGUGAGUAGCCUCUAGAAGCUGAAAAAGGCAAGAAAACGGAUUCUUCCCUAGAAUCUCCAGAAAUGCAGCCCUGCCAACAUGGUGAUUUUAACUCAAUGAGAUGCAUUUUAGACUUCUGACAUCUAGAAUUGUGUUAUUUUCAGCCCUCAAGUUUGUGGUAAUUUGUUACAGCAGCAUUAAGAAAAUGUACAAUGACCAUGUGCAGUGCCUCAUGCUUGUAAUCCCAGCACUUUGGGAGGCCAAGGUGGGUGGAUCGCUUGAGUCCAAGAGUUCGAGACCAGCCUGGGAAACAUGGUGAAACCUUGUCUCUACAAAAACACAAAAAUUAGCCUGGUGUGGUUGUGUGGACCUGUAGUCCCAGCUACUCUGGAGGCUGAGGUGGGAGGAUGGCUUAAACCCAUAAGGUGGAGAUUACAAUGAGCCAAGAUCAUGCCACUGCACUCCAGCCUGGACAGUAGAGCCAGAACUUCUCUCAAAAAAAUAAAAAAGAAAGAAACUAUACAAUGCUCCUGUGAUUCUAGUGCUAUGUACAUAUAUCCUUUAUAGGGAAUUAAGGAGGUUAUAGACACAACCAGAAGAGGAGGCAUGGAAUAGACUAAUGUAUAAUGGAUAGGAAAGUGUAUCUUUUACAACUUCUCUGUAAAAACACCUUCACCUACUUUAUGAGUUUGCCUCAGCUGCCAUAACAAAAUAUCAGACCAAGUGGCUUAAAUAACAAUUUAUUUUCUCACAGUUCUGGAGGCUAGAAGUCUAAGAUGAAAGUGCCAGCAAGUUUGAUUUCUGGUGAAGUCUCUCUUCCUUGCUUGCCAAUGGCCGCUUUCUCACUGUGUCUUCAAAUGUCCUUCCUCUGAGUAUGUGAGGAGAGAGAGGUUUGAUGCCUCUUCACCUUCUUAUAAGGACACCAGUCCUACUGGAUUAGGGCUCCACCCUUAUGACCUCAUUUAACCUUAAUUACCUCCUUAAAGGUUCUAUCUCCAAAUACAGUCACAUUUGGAGUCAGACCUACAACAUAUGAAUUUUGAGAGGACACAAUUCAGUCUAUAACACCUAGAUGGAAGGCAAUUUCAUAUAAAGAUGAUAUGCAGUCUAUGACAGCAAAGUAGCUAGUGGAAAUCACAACCCCUAAUUCUAUUUUUAUGUCAUUCCCUAAGUCCAGGUCCCAUGUGGAUAUAGCAUUGUUCAGGGCUAUCUCUUUGCUGUUCUUUUUUUUUUUUUAGACUCACACAAGCAAUGUGGAGAAGGAACAUGAAAACAUCUUUGAGAUAGAGCUUAAUACAGAUGUCAAUCUCUUUGUAAAUAAGCAAUUAAAAGUGGAACCACUGUCCACCAUGUGAGAAGAGUGACUGGCUAUGGCUGGAUAUUUUUAAAUACACAUAAAAUGUGGUAUAAAUGGUAGAAUGCCAGGGAUAGAAGGAGUAUCUUAUAAGUUACCUAGUCAACGUUCUGGCUUCUGGGCAGAAAACUAUCUAAACUCAGCCAGAUAAUCAGUUUCAACUAAAUCAGGAAAACAUGGAAUCAUCUUUAUCUAGGUAGUGUUAUAGUUACAUUGCCUCAUUUAUCUACACAUCAAUAAAUUCUUUCUCAUUGCUAAUAUUUAUCAUUCUUAUCAUAGUAUAAGCAAAUGUUUUAAUUCUAUUAUGGUAAAGAUAAAGCUUCUGUAAUUAAAACACUUUAAUCUGGAAAGACAGCAGUAAACCCUUCAAGCAAAAGCCCAAGUAGGUUCAAAAAUAAUAGCCAGAGAGGUUAAAGGUAAACCAAUAGAGUGAUAUGUUACAGCAACUAAGGGAGAGAGGCAGGAGUUUUUUAAAAGAGAGAAGAGG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    Taxonomic tree

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