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16S ribosomal RNA from Escherichia coli (PDB 3J9Z, chain SA) secondary structure diagram

16S ribosomal RNA from Escherichia coli (PDB 3J9Z, chain SA) URS00000ABFE9_562

Automated summary: This rRNA sequence is 1,542 nucleotides long and is found in Escherichia coli. Annotated by 4 databases (SILVA, Modomics, ENA, PDBe). Described in 34 papers. Has a conserved secondary structure or a structured region. Has an experimentally determined 3D structure. Matches 1 Rfam family (SSU_rRNA_bacteria, RF00177). 16S ribosomal RNA from Escherichia coli (PDB 3J9Z, chain SA) sequence is a product of rrsE, rrsA (CGSC No. 189), rrsA, rrsH, rrsB genes.

Genome locations

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    Gene Ontology annotations

    Sequence

    Sequence features are shown above as colored rectangles. Zoom in and click to view details, or Reset

    AAAUUGAAGAGUUUGAUCAUGGCUCAGAUUGAACGCUGGCGGCAGGCCUAACACAUGCAAGUCGAACGGUAACAGGAAGAAGCUUGCUUCUUUGCUGACGAGUGGCGGACGGGUGAGUAAUGUCUGGGAAACUGCCUGAUGGAGGGGGAUAACUACUGGAAACGGUAGCUAAUACCGCAUAACGUCGCAAGACCAAAGAGGGGGACCUUCGGGCCUCUUGCCAUCGGAUGUGCCCAGAUGGGAUUAGCUAGUAGGUGGGGUAACGGCUCACCUAGGCGACGAUCCCUAGCUGGUCUGAGAGGAUGACCAGCCACACUGGAACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGCAAGCCUGAUGCAGCCAUGCCGCGUGUAUGAAGAAGGCCUUCGGGUUGUAAAGUACUUUCAGCGGGGAGGAAGGGAGUAAAGUUAAUACCUUUGCUCAUUGACGUUACCCGCAGAAGAAGCACCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGUGCAAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGCACGCAGGCGGUUUGUUAAGUCAGAUGUGAAAUCCCCGGGCUCAACCUGGGAACUGCAUCUGAUACUGGCAAGCUUGAGUCUCGUAGAGGGGGGUAGAAUUCCAGGUGUAGCGGUGAAAUGCGUAGAGAUCUGGAGGAAUACCGGUGGCGAAGGCGGCCCCCUGGACGAAGACUGACGCUCAGGUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGUCGACUUGGAGGUUGUGCCCUUGAGGCGUGGCUUCCGGAGCUAACGCGUUAAGUCGACCGCCUGGGGAGUACGGCCGCAAGGUUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAACCUUACCUGGUCUUGACAUCCACGGAAGUUUUCAGAGAUGAGAAUGUGCCUUCGGGAACCGUGAGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUUGUGAAAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUAUCCUUUGUUGCCAGCGGUCCGGCCGGGAACUCAAAGGAGACUGCCAGUGAUAAACUGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGGCCCUUACGACCAGGGCUACACACGUGCUACAAUGGCGCAUACAAAGAGAAGCGACCUCGCGAGAGCAAGCGGACCUCAUAAAGUGCGUCGUAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUGAAGUCGGAAUCGCUAGUAAUCGUGGAUCAGAAUGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUGGGUUGCAAAAGAAGUAGGUAGCUUAACCUUCGGGAGGGCGCUUACCACUUUGUGAUUCAUGACUGGGGUGAAGUCGUAACAAGGUAACCGUAGGGGAACCUGCGGUUGGAUCACCUCCUUA

    Taxonomic tree

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    This sequence is found in 49 other species

    1. Escherichia coli DH1 16S ribosomal RNA from Escherichia coli DH1 (PDB 4V6K, chain BA)
    2. Escherichia coli str. K-12 substr. MDS42 16S ribosomal RNA from Escherichia coli str. K-12 substr. MDS42 (PDB 4WOI, chain DA)
    3. Cloning vector pRNA8 bacterial SSU rRNA
    4. Clonorchis sinensis Bacterial small subunit ribosomal RNA
    5. Escherichia coli 2.3916 bacterial SSU rRNA
    6. Escherichia coli 2.4168 bacterial SSU rRNA
    7. Escherichia coli 3.2303 bacterial SSU rRNA
    8. Escherichia coli 5.0588 bacterial SSU rRNA
    9. Escherichia coli 53638 bacterial SSU rRNA
    10. Escherichia coli 900105 (10e) bacterial SSU rRNA
    11. Escherichia coli 97.0246 bacterial SSU rRNA
    12. Escherichia coli ATCC 8739 16S ribosomal RNA
    13. Escherichia coli B41 bacterial SSU rRNA
    14. Escherichia coli BW25113 bacterial SSU rRNA
    15. Escherichia coli BW2952 bacterial SSU rRNA
    16. Escherichia coli EC4100B SSU rRNA
    17. Escherichia coli ER2796 bacterial SSU rRNA
    18. Escherichia coli ETEC H10407 bacterial SSU rRNA
    19. Escherichia coli IS25 SSU rRNA
    20. Escherichia coli KO11FL 16S ribosomal RNA
    21. Escherichia coli LY180 16S ribosomal RNA
    22. Escherichia coli O100:H21 16S ribosomal RNA
    23. Escherichia coli O145:H28 str. RM12581 bacterial SSU rRNA
    24. Escherichia coli O145:H28 str. RM13514 bacterial SSU rRNA
    25. Escherichia coli O157:H16 16S ribosomal RNA
    26. Escherichia coli O157:H7 16S ribosomal RNA
    27. Escherichia coli O157:H7 str. 1044 SSU rRNA
    28. Escherichia coli O157:H7 str. EC1212 SSU rRNA
    29. Escherichia coli O157:H7 str. EC4042 bacterial SSU rRNA
    30. Escherichia coli O157:H7 str. EC4045 bacterial SSU rRNA
    31. Escherichia coli O157:H7 str. EC4115 bacterial SSU rRNA
    32. Escherichia coli O157:H7 str. EC4196 bacterial SSU rRNA
    33. Escherichia coli O157:H7 str. EC4206 bacterial SSU rRNA
    34. Escherichia coli O157:H7 str. TW14359 bacterial SSU rRNA
    35. Escherichia coli O18ac:H14 16S ribosomal RNA
    36. Escherichia coli O39:H21 16S ribosomal RNA
    37. Escherichia coli O89m:H10 16S ribosomal RNA
    38. Escherichia coli O89m:H9 16S ribosomal RNA
    39. Escherichia coli SE11 bacterial SSU rRNA
    40. Escherichia coli str. K-12 substr. DH10B bacterial SSU rRNA
    41. Escherichia coli str. K-12 substr. MC4100 bacterial SSU rRNA
    42. Escherichia coli str. K-12 substr. MG1655 bacterial SSU rRNA
    43. Escherichia coli str. K-12 substr. W3110 bacterial SSU rRNA
    44. Escherichia coli UMN026 bacterial SSU rRNA
    45. Escherichia coli VR50 bacterial SSU rRNA
    46. Escherichia coli W 16S ribosomal RNA
    47. Escherichia coli K-12 RNA (1530-MER) from Escherichia coli K-12 (PDB 3JBV, chain A)
    48. Shigella dysenteriae bacterial SSU rRNA
    49. synthetic Escherichia coli C321.deltaA bacterial SSU rRNA
    50. uncultured bacterium SSU rRNA
    2D structure New