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Arabidopsis thaliana (thale-cress) pre-tRNA secondary structure diagram

Arabidopsis thaliana (thale-cress) pre-tRNA URS0000591E4F_3702

Automated summary: This ncRNA sequence is 72 nucleotides long and is found in Arabidopsis thaliana. Annotated by 5 databases (GeneCards, ENA, Rfam, TAIR, Ensembl Plants). Described in 9 papers. Has a conserved secondary structure or a structured region. Matches 1 Rfam family (tRNA, RF00005). Arabidopsis thaliana (thale-cress) pre-tRNA sequence is a product of AT4G37175, AT1G20170, tRNA-Glu-TTC-1-3, tRNA-Glu-TTC-1-6, AT5G27715, AT1G09110, tRNA-Glu-TTC-1-5, AT5G45715, tRNA-Glu-TTC-1-4, tRNA-Glu-TTC-1-1, AT5G66755, tRNA-Glu-TTC-1-2 genes. Found in the thale cress reference genome.

Genome locations

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    Gene Ontology annotations

    Sequence

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    UCCGAUGUCGUCCAGCGGUUAGGAUAUCUGGCUUUCACCCAGGAGACCCGGGUUCGAUUCCCGGCAUCGGAG

    Taxonomic tree

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    This sequence is found in 8 other species

    1. Arabidopsis halleri subsp. gemmifera tRNA-Glu for anticodon UUC
    2. Arabidopsis lyrata subsp. lyrata (lyrate rockcress) tRNA-Glu for anticodon UUC
    3. Arabis alpina tRNA
    4. Brassica napus (oilseed rape) tRNA-Glu for anticodon UUC
    5. Brassica oleracea var. oleracea (wild cabbage) tRNA-Glu for anticodon UUC
    6. Brassica rapa (bai cai) tRNA-Glu for anticodon UUC
    7. Brassica rapa subsp. pekinensis tRNA
    8. Capsella rubella tRNA
    9. Eutrema salsugineum tRNA
    2D structure New