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Oryza sativa (Asian cultivated rice) osa-miR396c-5p URS00001D441B_4530

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osa-miR396c-5p: Osa-mir396c-5p is a microRNA that has been studied in various contexts. In a study on rice, it was found that osa-mir396c-5p, along with other microRNAs such as osa-miR5072, osa-miR5082, osa-miR528-5p, and osa-miR169i-5p, was up-regulated after exposure to SDS, LDS, and REC [PMC5447883]. Another study found that the expression level of osa-mir396c-5p was increased in a resistant rice variety in response to blast pathogen infection [PMC6337123]. In the context of submergence response in rice, it was predicted that osa-mir396c-5p is one of the submergence-responsive microRNAs [PMC3819571]. Additionally, osa-mir396c-5p has been shown to be induced in the inflorescence of rice under drought stress [PMC5647096]. Furthermore, it has been identified as one of the common microRNAs showing preferential expression in fungal-infected resistant genotypes [PMC7662745]. The increased expression level of osa-mir396c-5p in a resistant rice variety suggests its potential role in rice immunity against M. oryzae [PMC7662745]. Overall, these studies highlight the involvement and potential significance of osa-mir396c-5p in various biological processes and stress responses in rice.

Genome locations

Gene Ontology annotations

Sequence

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Taxonomic tree

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This sequence is found in 52 other species

  1. Aegilops tauschii ata-miR396c-5p
  2. Amborella trichopoda atr-miR396e
  3. Ananas comosus (pineapple) sbi-miR396c
  4. Aquilegia coerulea (Rocky Mountain columbine) aqc-miR396b
  5. Arabidopsis lyrata (lyrate rockcress) aly-miR396b-5p
  6. Arabidopsis thaliana ath-miR396b-5p
  7. Avicennia marina ama-miR396-5p
  8. Brachypodium distachyon bdi-miR396e-5p
  9. Brassica napus bna-miR396a
  10. Brassica rapa bra-miR396-5p
  11. Bruguiera cylindrica bcy-miR396b
  12. Bruguiera gymnorhiza (Burma mangrove) bgy-miR396b
  13. Camelina sativa (false flax) cas-miR396b
  14. Citrus sinensis (sweet orange) csi-miR396f-5p
  15. Citrus x clementina (clementine) ccl-miR396
  16. Corchorus capsularis (jute) sRNA CCACVL1_27830
  17. Corchorus olitorius aau-miR3
  18. Cucumis melo (muskmelon) cme-miR396d
  19. Cynara cardunculus (wild artichoke) cca-miR396a-5p
  20. Fragaria vesca subsp. vesca fve-miR396b-5p
  21. Glycine max gma-miR396c
  22. Helianthus annuus ath-miR396b-5p
  23. Hypericum perforatum Hyp-miR396
  24. Linum usitatissimum lus-miR396e
  25. Malus domestica (apple) mdm-miR396d
  26. Manihot esculenta mes-miR396f
  27. Medicago truncatula mtr-miR396a-5p
  28. Nicotiana attenuata microRNA mir-396-like
  29. Nicotiana tabacum (common tobacco) nta-miR396b
  30. Oryza alta miR396c 5p
  31. Oryza australiensis miR396c 5p
  32. Oryza barthii miR396c 5p
  33. Oryza glaberrima miR396c 5p
  34. Oryza minuta miR396c 5p
  35. Oryza nivara miR396c 5p
  36. Oryza rufipogon miR396c 5p
  37. Oryza sativa Indica Group miR396c 5p
  38. Oryza sativa Japonica Group (Japanese rice) miR396c 5p
  39. Pachycladon cheesemanii Pch-miR396b
  40. Pachycladon fastigiatum Pfa-miR396b
  41. Picea abies pab-miR396h
  42. Pinus taeda pta-miR396
  43. Populus tomentosa Pto-miR396d
  44. Populus trichocarpa (black cottonwood) ptc-miR396d
  45. Prunus persica (peach) ppe-miR396b
  46. Ricinus communis rco-miR396
  47. Rosa chinensis ath-miR396b-5p
  48. Solanum lycopersicum (tomato) sly-miR396b
  49. Solanum tuberosum stu-miR396-5p
  50. Sorghum bicolor (sorghum) sbi-miR396c
  51. Theobroma cacao tcc-miR396e
  52. Zea mays (maize) zma-miR396f-5p
Publications