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Aegilops tauschii ata-miR396c-5p URS00001D441B_37682

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ata-miR396c-5p: Ata-mir396c-5p is a microRNA that is relatively abundant at 7 days after anthesis (DAA) and is involved in grain size regulation [PMC7045451]. It belongs to the miR396 family, along with ata-miR396e-5p and ata-miR396a-5p, which are also abundant at 7 DAA and play a role in grain development [PMC7045451]. These miRNAs target genes that function in response to gibberellin (GA), act as transcription factors, are GTPases, and act as protein kinases [PMC7045451]. During the early stages of development, ata-mir396c-5p is relatively more abundant compared to later stages [PMC7045451]. It is also up-regulated in certain conditions such as L21 and J22 [PMC5411081]. In durum wheat, the reduced abundance of ata-mir396c-5p leads to increased expression of NDH and PGR5 genes, which protect the photosynthetic apparatus under stress conditions [PMC7504575]. Ata-mir396c-5p negatively regulates the expression of target genes such as ClpC2 and HSP90 upon heat exposure [PMC7504575]. In pericarp development stages, the expression level of ata-mir396c-5p shows a negative correlation with SmWRKY30 gene expression [PMC9869041]. Additionally, ata-mir396c-5p targets hnRNP 1-like genes along with tae-miR9772 and sbi-miR396c_R+1 in wheat [PMC7076468]. The reduced abundance of osa-miR160f-5p and ata-mir396c-5p leads to increased expression of NDH and PGR5 genes in durum wheat [PMC9459240].

Genome locations

Gene Ontology annotations

Sequence

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This sequence is found in 52 other species

  1. Amborella trichopoda atr-miR396e
  2. Ananas comosus (pineapple) sbi-miR396c
  3. Aquilegia coerulea (Rocky Mountain columbine) aqc-miR396b
  4. Arabidopsis lyrata (lyrate rockcress) aly-miR396b-5p
  5. Arabidopsis thaliana ath-miR396b-5p
  6. Avicennia marina ama-miR396-5p
  7. Brachypodium distachyon bdi-miR396e-5p
  8. Brassica napus bna-miR396a
  9. Brassica rapa bra-miR396-5p
  10. Bruguiera cylindrica bcy-miR396b
  11. Bruguiera gymnorhiza (Burma mangrove) bgy-miR396b
  12. Camelina sativa (false flax) cas-miR396b
  13. Citrus sinensis (sweet orange) csi-miR396f-5p
  14. Citrus x clementina (clementine) ccl-miR396
  15. Corchorus capsularis (jute) sRNA CCACVL1_27830
  16. Corchorus olitorius aau-miR3
  17. Cucumis melo (muskmelon) cme-miR396d
  18. Cynara cardunculus (wild artichoke) cca-miR396a-5p
  19. Fragaria vesca subsp. vesca fve-miR396b-5p
  20. Glycine max gma-miR396c
  21. Helianthus annuus ath-miR396b-5p
  22. Hypericum perforatum Hyp-miR396
  23. Linum usitatissimum lus-miR396e
  24. Malus domestica (apple) mdm-miR396d
  25. Manihot esculenta mes-miR396f
  26. Medicago truncatula mtr-miR396a-5p
  27. Nicotiana attenuata microRNA mir-396-like
  28. Nicotiana tabacum (common tobacco) nta-miR396b
  29. Oryza alta miR396c 5p
  30. Oryza australiensis miR396c 5p
  31. Oryza barthii miR396c 5p
  32. Oryza glaberrima miR396c 5p
  33. Oryza minuta miR396c 5p
  34. Oryza nivara miR396c 5p
  35. Oryza rufipogon miR396c 5p
  36. Oryza sativa (Asian cultivated rice) osa-miR396c-5p
  37. Oryza sativa Indica Group miR396c 5p
  38. Oryza sativa Japonica Group (Japanese rice) miR396c 5p
  39. Pachycladon cheesemanii Pch-miR396b
  40. Pachycladon fastigiatum Pfa-miR396b
  41. Picea abies pab-miR396h
  42. Pinus taeda pta-miR396
  43. Populus tomentosa Pto-miR396d
  44. Populus trichocarpa (black cottonwood) ptc-miR396d
  45. Prunus persica (peach) ppe-miR396b
  46. Ricinus communis rco-miR396
  47. Rosa chinensis ath-miR396b-5p
  48. Solanum lycopersicum (tomato) sly-miR396b
  49. Solanum tuberosum stu-miR396-5p
  50. Sorghum bicolor (sorghum) sbi-miR396c
  51. Theobroma cacao tcc-miR396e
  52. Zea mays (maize) zma-miR396f-5p
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