Genomic mapping

Species with genomic mapping

Genomic mapping is available for the following 560 species:

Species Assembly
Thalassiosira pseudonana ASM14940v2
Fusarium verticillioides ASM14955v1
Aspergillus terreus ASM14961v1
Neosartorya fischeri ASM14964v1
Phytophthora ramorum Sudden oak death agent ASM14973v1
Puccinia graminis ASM14992v1
Pyrenophora triticirepentis ASM14998v1
Orchesella cincta ASM171814v1
Aspergillus oryzae ASM18445v3
Ailuropoda melanoleuca giant panda ASM200744v2
Nematostella vectensis starlet sea anemone ASM20922v1
Acanthochromis polyacanthus spiny chromis ASM210954v1
Malus domestica golden ASM211411v1
Aedes albopictus Asian tiger mosquito AaloF1
Anopheles coluzzii AcolM1
Anopheles darlingi AdarC3
Anas zonorhyncha Eastern spot-billed duck ASM222487v1
Leptosphaeria maculans ASM23037v1
Schistosoma mansoni blood fluke ASM23792v2
Onchocerca volvulus ASM49940v2
Capsicum annuum ASM51225v2
Oreochromis aureus blue tilapia ASM587006v1
Komagataella pastoris ASM2700v1
Anoplophora glabripennis Agla_1.0
Anopheles melas AmelC2
Anopheles minimus AminM1
Aotus nancymaae Ma's night monkey Anan_2.0
Amphimedon queenslandica Aqu1
Lates calcarifer barramundi perch ASB_HGAPassembly_v1
Scophthalmus maximus turbot ASM1334776v1
Phytophthora infestans potato late blight agent ASM14294v1
Phaeosphaeria nodorum ASM14691v1
Sclerotinia sclerotiorum ASM14694v1
Fusarium pseudograminearum FP7
Clytia hemisphaerica gca902728285 GCA902728285v1
Glossina palpalis GpapI1
Hippocampus comes tiger tail seahorse H_comes_QL1_v1
Anopheles maculatus AmacM1
Apis mellifera honey bee Amel_HAv3.1
Aspergillus fumigatusa1163 ASM15014v1
Trichoplax adhaerens ASM15027v1
Phaeodactylum tricornutum Phaeodactylum tricornutum ASM15095v2
Puccinia triticina ASM15152v1
Bombyx mori silkworm ASM15162v1
Tuber melanosporum Perigord truffle ASM15164v1
Daucus carota carrots ASM162521v1
Kryptolebias marmoratus mangrove rivulus ASM164957v1
Paramecium tetraurelia ASM16542v1
Beauveria bassiana ASM168263v1
Chenopodium quinoa ASM168347v1
Rhinopithecus bieti Black snub-nosed monkey ASM169854v1
Mola mola ocean sunfish ASM169857v1
Trichoderma virens Trichoderma virens ASM17099v1
Manacus vitellinus golden-collared manakin ASM171598v2
Helobdella robusta freshwater leech Helro1
Salvator merianae Argentine black and white tegu HLtupMer3
Entamoeba histolytica JCVI-ESG2-1.0
Lepidothrix coronata blue-crowned manakin Lepidothrix_coronata-1.0
Macaca fascicularis Crab-eating macaque Macaca_fascicularis_6.0
Moschus moschiferus Siberian musk deer MosMos_v2_BIUU_UCD
Nothoprocta perdicaria Chilean tinamou notPer1
Oryza longistaminata long-staminate rice O_longistaminata_v1.0
Anopheles arabiensis AaraD1
Oryzias latipes Japanese medaka HdrR ASM223467v1
Tetranychus urticae two-spotted spider mite ASM23943v1
Plasmodium vivax ASM241v2
Aspergillus fumigatus ASM265v1
Aspergillus clavatus ASM271v1
Leishmania major ASM272v2
Plasmodium falciparum ASM276v2
Aspergillus niger ASM285v2
Schizosaccharomyces pombe ASM294v2
Calidris pygmaea Spoon-billed sandpiper ASM369795v1
Junco hyemalis dark-eyed junco ASM382977v1
Phasianus colchicus Ring-necked pheasant ASM414374v1
Oryza indica Indian rice ASM465v1
Varanus komodoensis Komodo dragon ASM479886v1
Crassostrea gigas Pacific oyster oyster_v9
Pan paniscus bonobo panpan1.1
Plasmodium chabaudi PCHAS01
Phaseolus vulgaris French bean PhaVulg1_0
Pythium iwayamai piw_scaffolds_v1
Octopus bimaculoides California two-spot octopus PRJNA270931
Pundamilia nyererei Makobe Island cichlid PunNye1.0
Setaria italica foxtail millet Setaria_italica_v2.0
Strongylocentrotus purpuratus purple sea urchin Spur_5.0
Anopheles atroparvus AatrE3
Delphinapterus leucas beluga whale ASM228892v3
Plasmodium knowlesi ASM635v1
Struthio camelus australis African ostrich ASM69896v1
Drosophila simulans ASM75419v3
Belgica antarctica ASM77530v1
Thelohanellus kitauei ASM82789v1
Botrytis cinerea ASM83294v1
Oryzias sinensis Chinese medaka ASM858656v1
Stachyris ruficeps rufous-capped babbler ASM869450v1
Anas platyrhynchos mallard ASM874695v1
Nymphaea colorata ASM883128v1
Ashbya gossypii ASM9102v1
Cryptococcus neoformans ASM9104v1
Cyanidioschyzon merolae haploid red algae ASM9120v1
Ostreococcus lucimarinus green algae ASM9206v1
Ursus thibetanus thibetanus Asiatic black bear ASM966005v1
Catharus ustulatus Swainson's thrush bCatUst1.pri
Drosophila melanogaster fruit fly BDGP6.32
Biomphalaria glabrata BglaB1
Anopheles culicifacies AculA1
Anopheles funestus African malaria mosquito AfunF3
Adineta vaga AMS_PRJEB1171_v1
Bemisia tabaci asiaii5 ASIAII5_n227_616Mb
Monodelphis domestica gray short-tailed opossum ASM229v1
Spermophilus dauricus Daurian ground squirrel ASM240643v1
Anser brachyrhynchus pink-footed goose ASM259213v1
Leptobrachium leishanense Leishan spiny toad ASM966780v1
Eragrostis tef ASM97063v1
Asparagus officinalis Aspof.V1
Haplochromis burtoni Burton's mouthbrooder AstBur1.0
Anopheles stephensi Asian malaria mosquito AsteS1
Brassica napus oilseed rape AST_PRJEB5043_v1
Astyanax mexicanus Mexican tetra Astyanax_mexicanus-2.0
Athene cunicularia burrowing owl athCun1
Atta cephalotes leaf-cutter ant Attacep1.0
Coffea canephora AUK_PRJEB4211_v1
Labrus bergylta ballan wrasse BallGen_V1
Aquila chrysaetos chrysaetos golden eagle bAquChr1.2
Vombatus ursinus common wombat bare-nosed_wombat_genome_assembly
Callithrix jacchus white-tufted-ear marmoset ASM275486v1
Cercocebus atys Sooty mangabey Caty_1.0
Bigelowiella natans Bigna1
Bombus impatiens BIMP_2.0
Bison bison bison American bison Bison_UMD1.0
Brassica oleracea wild cabbage BOL
Bos mutus wild yak BosGru_v2.0
Brachypodium distachyon false brome Brachypodium_distachyon_v3.0
Branchiostoma lanceolatum amphioxus BraLan2
Brassica rapa bai cai Brapa_1.0
Strigops habroptila Kakapo bStrHab1_v1.p
Bombus terrestris buff-tailed bumblebee Bter_1.0
Cairina moschata domestica muscovy Duck (domestic type) CaiMos1.0
Camelus dromedarius Arabian camel CamDro2
Canis lupus familiaris dog CanFam3.1
Colobus angolensis palliatus Angola colobus Cang.pa_1.0
Capitella teleta bristle worm Capitella teleta v1.0
Mus caroli Ryukyu mouse CAROLI_EIJ_v1.1
Catagonus wagneri Chacoan peccary CatWag_v2_BIUU_UCD
Anas platyrhynchos platyrhynchos common mallard CAU_duck1.0
Cavia aperea Brazilian guinea pig CavAp1.0
Cavia porcellus domestic guinea pig Cavpor3.0
Caenorhabditis briggsae CB4
Chara braunii Cbr_1.0
Caenorhabditis brenneri C_brenneri-6.0.1b
Camelina sativa Cs
Anopheles sinensis china AsinC2
Lucilia cuprina ASM118794v1
Piliocolobus tephrosceles Ugandan red Colobus ASM277652v2
Physeter catodon sperm whale ASM283717v2
Gopherus agassizii Agassiz's desert tortoise ASM289641v1
Corchorus capsularis jute CCACVL1_1.0
Castor canadensis American beaver C.can_genome_v1.0
Cynara cardunculus CcrdV1
Cebus capucinus White-headed capuchin Cebus_imitator-1.0
Eragrostis curvula CERZOS_E.curvula1.0
Cervus hanglu yarkandensis Yarkand deer CEY_v1
Colletotrichum graminicola C_graminicola_M1_001_V1
Chelydra serpentina Common snapping turtle Chelydra_serpentina-1.0
Chinchilla lanigera Long-tailed chinchilla ChiLan1.0
Chlamydomonas reinhardtii chlamy Chlamydomonas_reinhardtii_v5.5
Choloepus hoffmanni Hoffmann's two-fingered sloth choHof1
Chrysemys picta bellii Western painted turtle Chrysemys_picta_bellii-3.0.3
Chrysolophus pictus golden pheasant Chrysolophus_pictus_GenomeV1.0
Accipiter nisus Eurasian sparrowhawk Accipiter_nisus_ver1.0
Anopheles dirus AdirW1
Clupea harengus Atlantic herring Ch_v2.0.2
Citrus clementina Citrus_clementina_v1.0
Caenorhabditis japonica C_japonica-7.0.1
Cimex lectularius bed bug ClecH1
Sorex araneus European shrew sorAra1
Coturnix japonica Japanese quail Coturnix_japonica_2.0
Anopheles christyi AchrA1
Aegilops tauschii Tausch's goatgrass ASM34733v1
Pavo cristatus Indian peafowl AIIM_Pcri_1.0
Prunus dulcis ALMONDv2
Culex quinquefasciatus southern house mosquito CpipJ2
Caenorhabditis remanei C_remanei-15.0.1
Cricetulus griseus crigri Chinese hamster CriGri_1.0
Crocodylus porosus Australian saltwater crocodile CroPor_comp1
Ciona savignyi Sea squirt Ciona savignyi CSAV 2.0
Culicoides sonorensis Cson1
Cyprinodon variegatus sheepshead minnow C_variegatus-1.0
Capra hircus blackbengal goat CVASU_BBG_1.0
Cyanistes caeruleus blue tit cyaCae2
Drosophila ananassae dana_caf1
Daphnia magna daphmag2.4
Dasypus novemcinctus nine-banded armadillo Dasnov3.0
Dendroctonus ponderosae mountain pine beetle DendPond_male_1.0
Drosophila erecta dere_caf1
Drosophila grimshawi dgri_caf1
Dictyostelium discoideum dicty_2.7
Drosophila mojavensis dmoj_caf1
Brassica rapa field mustard IVFCAASv1
Anopheles epiroticus AepiE1
Anopheles farauti AfarF2
Fukomys damarensis Damara mole rat DMR_v1.0
Dipodomys ordii Ord's kangaroo rat Dord_2.0
Danaus plexippus monarch butterfly Dpv3
Dromaius novaehollandiae emu droNov1
Drosophila sechellia dsec_caf1
Drosophila virilis dvir_caf1
Drosophila willistoni dwil_caf1
Drosophila yakuba dyak_caf1
Pseudonaja textilis eastern brown snake EBS10Xv2-PRI
Eptatretus burgeri Inshore hagfish Eburgeri_3.2
Electrophorus electricus electric eel Ee_SOAP_WITH_SSPACE
Fusarium culmorum Fusarium culmorum UK99 EF 1
Blumeria graminis EF2
Eucalyptus grandis Egrandis1_0
Triticum urartu red wild einkorn wheat ASM34745v1
Chondrus crispus Irish moss ASM35022v2
Anopheles albimanus AalbS2
Acyrthosiphon pisum pea aphid Acyr_2.0
Amphiprion ocellaris clown anemonefish AmpOce1.0
Papaver somniferum ASM357369v1
Ipomoea triloba ASM357664v1
Anolis carolinensis green anole AnoCar2.0v2
Chelonoidis abingdonii Abingdon island giant tortoise ASM359739v1
Apteryx owenii little spotted kiwi aptOwe1
Pristionchus pacificus El_Paco
Bos taurus cattle ARS-UCD1.2
Hucho hucho huchen ASM331708v1
Esox lucius northern pike Eluc_v4
Ursus americanus American black bear ASM334442v1
Emiliania huxleyi Emiliana huxleyi CCMP1516 main genome assembly v1.0
Albugo laibachii ENA 1
Carassius auratus goldfish ASM336829v1
Galdieria sulphuraria red algae ASM34128v1
Equus caballus horse EquCab3.0
Eutrema salsugineum Eutsalg1_0
Ananas comosus F153
Falco tinnunculus common kestrel FalTin1.0
Anabas testudineus climbing perch fAnaTes1.2
Astatotilapia calliptera eastern happy fAstCal1.2
Betta splendens Siamese fighting fish fBetSpl5.2
Cottoperca gobio channel bull blenny fCotGob3.1
Cyclopterus lumpus lumpfish fCycLum1.pri
Denticeps clupeoides denticle herring fDenClu1.1
Echeneis naucrates live sharksucker fEcheNa1.1
Felis catus domestic cat Felis_catus_9.0
Erpetoichthys calabaricus reedfish fErpCal1.1
Gouania willdenowi blunt-snouted clingfish fGouWil2.1
Ficedula albicollis Collared flycatcher FicAlb1.5
Mastacembelus armatus zig-zag eel fMasArm1.2
Fusarium oxysporum FO2
Aegilops tauschii Tausch's goatgrass Aet v4.0
Parambassis ranga Indian glassy fish fParRan2.1
Vitis vinifera wine grape 12X
Salarias fasciatus jewelled blenny fSalaFa1.1
Salmo trutta brown trout fSalTru1.1
Scleropages formosus Asian bonytongue fSclFor1.1
Sparus aurata gilthead seabream fSpaAur1.1
Sphaeramia orbicularis orbiculate cardinalfish fSphaOr1.1
Takifugu rubripes fugu fTakRub1.2
Fundulus heteroclitus mummichog Fundulus_heteroclitus-3.0.2
Gadus morhua Atlantic cod gadMor3.0
Gaeumannomyces graminis Gae_graminis_V2
Glossina austeni GausT1
Glossina brevipalpis GbreI1
Yarrowia lipolytica ASM252v1
Schizosaccharomyces cryophilus SCY4
Schizosaccharomyces japonicus SJ5
Schizosaccharomyces octosporus SO6
Pyrenophora teres PyrTer_1.0
Microbotryum violaceum M_violaceum_V1
Trichoderma reesei v2.0
Melampsora laricipopulina v1.0
Sporisorium reilianum ASM23024v1
Colletotrichum higginsianum ASM31379v2
Colletotrichum gloeosporioides Colletotrichum gloeosporioides Nara gc-5
Colletotrichum orbiculare Corbiculare240422v01
Trialeurodes vaporariorum gca011764245 greenhouse whitefly GCA011764245v1
Geospiza fortis medium ground-finch GeoFor_1.0
Glossina fuscipes GfusI1
Giardia lamblia GL2
Glycine max soybeans Glycine_max_v2.1
Glossina morsitans GmorY1
Anser cygnoides swan goose GooseV1.0
Gorilla gorilla Western Lowland Gorilla gorGor4
Erythrura gouldiae Gouldian finch GouldianFinch
Glossina pallidipes GpalI1
Gossypium raimondii Graimondii2_0_v6
Gallus gallus chicken GRCg6a
Homo sapiens human GRCh38.p13
Mus musculus mouse GRCm39
Danio rerio zebrafish GRCz11
Guillardia theta Guith1
Poecilia reticulata guppy Guppy_female_1.0_MT
Helianthus annuus common sunflower HanXRQr1.0
Erinaceus europaeus western European hedgehog eriEur1
Heterocephalus glaber male naked mole-rat HetGla_1.0
Heliconius melpomene postman butterfly Hmel1
Hofstenia miamia HmiaM1
Peromyscus maniculatus bairdii Northern American deer mouse HU_Pman_2.1
Hyaloperonospora arabidopsidis HyaAraEmoy2_2.0
Hordeum vulgare two-rowed barley IBSC v2
Salmo salar Atlantic salmon ICSASG_v2
Ictalurus punctatus channel catfish IpCoco_1.2
Oryza sativa Japanese rice IRGSP-1.0
Ixodes scapularis black-legged tick IscaW1
Aspergillus flavus JCVI-afl1-v2.0
Tetrahymena thermophila JCVI-TTA1-2.2
Kalanchoe fedtschenkoi K_fedtschenkoi_M2_v1
Ciona intestinalis Sea squirt Ciona intestinalis KH
Latimeria chalumnae coelacanth LatCha1
Laticauda laticaudata blue-ringed sea krait latLat_1.0
Larimichthys crocea large yellow croaker L_crocea_2.0
Lepisosteus oculatus Spotted gar LepOcu1
Lingula anatina LinAna1.0
Lutzomyia longipalpis LlonJ1
Loa loa eye worm Loa_loa_V3
Lonchura striata domestica Bengalese finch LonStrDom1
Lottia gigantea owl limpet Lotgi1
Loxodonta africana African savanna elephant Loxafr3.0
Lepeophtheirus salmonis Salmon louse LSalAtl2s
Bos grunniens domestic yak LU_Bosgru_v3.0
Lupinus angustifolius blue lupin LupAngTanjil_v1.0
Magnaporthe poae Mag_poae_ATCC_64411_V1
Monopterus albus swamp eel M_albus_1.0
Manihot esculenta cassava Manihot esculenta v6
Marchantia polymorpha Marchanta_polymorpha_v1
Marmota marmota marmota Alpine marmot marMar2.1
Balaenoptera musculus Blue whale mBalMus1.v2
Malurus cyaneus samueli superb fairywren mCya_1.0
Microcebus murinus gray mouse lemur Mmur_3.0
Mnemiopsis leidyi warty comb jelly MneLei_Aug2011
Macaca nemestrina Pig-tailed macaque Mnem_1.0
Ornithorhynchus anatinus platypus mOrnAna1.p.v1
Phytophthora lateralis MPF4_v1.0
Phocoena sinus vaquita mPhoSin1.pri
Rhinolophus ferrumequinum greater horseshoe bat mRhiFer1_v1.p
Sarcophilus harrisii Tasmanian devil mSarHar1.11
Sciurus vulgaris Eurasian red squirrel mSciVul1.1
Arabis alpina A_alpina_V4
Myripristis murdjan pinecone soldierfish fMyrMur1.1
Meriones unguiculatus Mongolian gerbil MunDraft-v1.0
Musa acuminata wild Malaysian banana Musa_acuminata_v2
Mus spicilegus steppe mouse MUSP714
Mustela putorius furo Domestic ferret MusPutFur1.0
Myotis lucifugus little brown bat Myoluc2.0
Zalophus californianus california sea lion mZalCal1.pri
Maylandia zebra zebra mbuna M_zebra_UMD2a
Naja naja Indian cobra Nana_v5
Neurospora crassa NC12
Amphiprion percula orange clownfish Nemo_v1
Neolamprologus brichardi lyretail cichlid NeoBri1.0
Nothobranchius furzeri turquoise killifish Nfu_20140520
Monodon monoceros narwhal NGI_Narwhal_1
Nicotiana attenuata coyote tobacco NIATTr2
Nomascus leucogenys Northern white-cheeked gibbon Nleu_3.0
Neovison vison American mink NNQGG.v01
Numida meleagris helmeted guineafowl NumMel1.0
Nasonia vitripennis jewel wasp Nvit_psr_1.1
Ovis aries sheep Oar_v3.1
Oryza barthii African wild rice O.barthii_v1
Ochotona princeps American pika OchPri2.0-Ens
Octodon degus Degu OctDeg1.0
Olea europaea sylvestris O_europaea_v1
Oryzias javanicus javanese ricefish OJAV_1.1
Oryzias melastigma Indian medaka Om_v0.7.RACA
Oncorhynchus mykiss rainbow trout Omyk_1.0
Oreochromis niloticus Nile tilapia O_niloticus_UMD_NMBU
Oryza rufipogon common wild rice OR_W1943
Oryctolagus cuniculus rabbit OryCun2.0
Oryza brachyantha malo sina Oryza_brachyantha.v1.4b
Oryza glaberrima African rice Oryza_glaberrima_V1
Oryza glumipatula South American wild rice Oryza_glumaepatula_v1.5
Oryza meridionalis Australian wild rice Oryza_meridionalis_v1.3
Oryza nivara weedy rice Oryza_nivara_v1.0
Oryza punctata red rice Oryza_punctata_v1.2
Otolemur garnettii small-eared galago OtoGar3
Oncorhynchus tshawytscha Chinook salmon Otsh_v1.0
Otus sunia Oriental scops-owl OtuSun1.0
Pythium aphanidermatum pag1_scaffolds_v1
Mus pahari Shrew mouse PAHARI_EIJ_v1.1
Panthera leo lion PanLeo1.0
Panthera pardus leopard PanPar1.0
Panthera tigris altaica Tiger PanTig1.0
Pan troglodytes chimpanzee Pan_tro_3.0
Papio anubis Olive baboon Panu_3.0
Pythium arrhenomanes par_scaffolds_v1
Parus major Great Tit Parus_major1.1
Prunus avium PAV_r1.0
Plasmodium berghei PBANKA01
Propithecus coquereli Coquerel's sifaka Pcoq_1.0
Pelodiscus sinensis Chinese softshell turtle PelSin_1.0
Pelusios castaneus West African mud turtle Pelusios_castaneus-1.0
Triticum aestivum arinalrfor PGSBv2.0_Arinalrfor
Phascolarctos cinereus koala phaCin_unsw_v4.1
Panicum hallii PhalliiHAL_v2.1
Panicum hallii fil2 PHallii_v3.1
Pediculus humanus PhumU2
Phytophthora kernoviae PhyKer238/432v1
Physcomitrium patens moss Phypa V3
Phytophthora parasitica Phyt_para_P1569_V1
Pythium irregulare pir_scaffolds_v1
Pistacia vera PisVer_v2
Paramormyrops kingsleyae Paramormyrops kingsleyae PKINGS_0.1
Poecilia latipinna sailfin molly P_latipinna-1.0
Petromyzon marinus sea lamprey Pmarinus_7.0
Poecilia mexicana shortfin molly P_mexicana-1.0
Periophthalmus magnuspinnatus Periophthalmus magnuspinnatus PM.fa
Podarcis muralis common wall lizard PodMur_1.0
Poecilia formosa Amazon molly Poecilia_formosa-5.1.2
Populus trichocarpa poplar Pop_tri_v3
Phlebotomus papatasi PpapI1
Pongo abelii Bornean orangutan PPYG2
Procavia capensis cape rock hyrax proCap1
Prolemur simus greater bamboo lemur Prosim_1.0
Prunus persica peach Prunus_persica_NCBIv2
Phytophthora sojae P.sojae V3.0
Puccinia striiformis PST-130_1.0
Pteropus vampyrus large flying fox pteVam1
Pythium ultimum pug
Pythium vexans pve_scaffolds_v1
Pygocentrus nattereri red-bellied piranha Pygocentrus_nattereri-1.0.2
Saccharomyces cerevisiae baker's yeast R64-1-1
Arabidopsis halleri Ahal2.2
Amborella trichopoda Amborella AMTR1.0
Rosa chinensis RchiOBHm-V2
Actinidia chinensis Red5_PS1_1.69.0
Beta vulgaris sugar beet RefBeet-1.2.2
Neogobius melanostomus round goby RGoby_Basel_V2
Gopherus evgoodei Goodes thornscrub tortoise rGopEvg1_v1.p
Rattus norvegicus Norway rat Rnor_6.0
Rhodnius prolixus RproC3
Fusarium graminearum RR 1
Rhinopithecus roxellana Golden snub-nosed monkey Rrox_v1
Saimiri boliviensis boliviensis Bolivian squirrel monkey SaiBol1.0
Sinocyclocheilus grahami golden-line barbel SAMN03320097.WGS_v1.1
Sinocyclocheilus rhinocerous horned golden-line barbel SAMN03320098_v1.1
Sinocyclocheilus anshuiensis blind barbel SAMN03320099.WGS_v1.1
Serinus canaria common canary SCA1
Stomoxys calcitrans stable fly ScalU1
Seriola dumerili greater amberjack Sdu_1.0
Seriola lalandi dorsalis yellowtail amberjack Sedor1
Setaria viridis Setaria_viridis_v2.0
Sesamum indicum S_indicum_v1.0
Solanum lycopersicum tomato SL3.0
Sander lucioperca pike-perch SLUC_FBN_1
Strigamia maritima Smar1
Strix occidentalis caurina northern spotted owl Soccid_v01
Solanum tuberosum potato SolTub_3.0
Sorghum bicolor sorghum Sorghum_bicolor_NCBIv3
Ictidomys tridecemlineatus thirteen-lined ground squirrel SpeTri2.0
Mus spretus algerian mouse SPRET_EiJ_v1
Strongyloides ratti S_ratti_ED321_v5_0_4
Sarcoptes scabiei SscaA1
Sus scrofa pig Sscrofa11.1
Saccharum spontaneum Sspon.HiC_chr_asm
Stegastes partitus bicolor damselfish Stegastes_partitus-1.0.2
Stegodyphus mimosarum Stegodyphus_mimosarum_v1
Camarhynchus parvulus small tree finch STF_HiC
Triticum turgidum durum wheat svevo
Arabidopsis thaliana thale-cress TAIR10
Carlito syrichta Philippine tarsier Tarsius_syrichta-2.0.1
Tigriopus californicus gca007210705 Tcal_SD_v2.1
Tribolium castaneum red flour beetle Tcas5.2
Apteryx haastii Great spotted kiwi aptHaa1
Zosterops lateralis melanops silver-eye ASM128173v1
Calidris pugnax ruff ASM143184v1
Gambusia affinis western mosquitofish ASM309773v1
Canis lupus dingo dingo ASM325472v1
Brugia malayi Bmal-4.0
Citrullus lanatus Cla97_v1
Cyprinus carpio common carp common_carp_genome
Mayetiola destructor Hessian fly Mdes_1.0
Musca domestica house fly MdomA1
Medicago truncatula barrel medic MedtrA17_4.0
Suricata suricatta meerkat meerkat_22Aug2017_6uvM2_HiC
Melitaea cinxia Glanville fritillary MelCinx1.0
Cucumis melo Melonv4
Melopsittacus undulatus Budgie Melopsittacus_undulatus_6.3
Mesocricetus auratus Golden Hamster MesAur1.0
Notamacropus eugenii tammar wallaby Meug_1.0
Zymoseptoria tritici MG2
Magnaporthe oryzae MG8
Amphilophus citrinellus Midas cichlid Midas_v5
Mandrillus leucophaeus Drill Mleu.le_1.0
Lynx canadensis Canada lynx mLynCan4_v1.p
Macaca mulatta Macaque Mmul_10
Aedes aegypti lvpagwg yellow fever mosquito AaegL5
Drosophila persimilis dper_caf1
Megaselia scalaris Msca1
Dothistroma septosporum Dothistroma septosporum NZE10 v1.0
Anopheles quadriannulatus AquaS1
Corvus moneduloides New Caledonian crow UO_Cmon_1.0
Anopheles gambiae African malaria mosquito AgamP4
Apteryx rowi Okarito brown kiwi aptRow1
Equus asinus asinus donkey ASM303372v1
Taeniopygia guttata zebra finch bTaeGut1_v1.p
Callorhinchus milii elephant shark Callorhinchus_milii-6.1.3
Nannospalax galili Upper Galilee mountains blind mole rat S.galili_v1.0
Solenopsis invicta red fire ant Si_gnH
Dioscorea rotundata TDr96_F1_v2_PseudoChromosome
Teleopsis dalmanni Tel_dalmanni_2A_v1.0
Echinops telfairi small Madagascar hedgehog TENREC
Tetraodon nigroviridis spotted green pufferfish TETRAODON 8.0
Toxoplasma gondii TGA4
Theropithecus gelada gelada Tgel_1.0
Terrapene carolina triunguis Three-toed box turtle T_m_triunguis-2.0
Tupaia belangeri northern tree shrew tupBel1
Trifolium pratense purple clover Trpr
Meleagris gallopavo turkey Turkey_5.1
Tursiops truncatus bottlenosed dolphin turTru1
Ustilago maydis Umaydis521_2.0
Bos indicus hybrid hybrid cattle UOA_Brahman_1
Notechis scutatus mainland tiger snake TS10Xv2-PRI
Trichinella spiralis pork worm Tspiralis1
Anopheles merus AmerM2
Aspergillus nidulans ASM1142v1
Verticillium dahliae ASM15067v2
Folsomia candida ASM221717v1
Sphenodon punctatus tuatara ASM311381v1
Urocitellus parryii Arctic ground squirrel ASM342692v1
Amazona collaria yellow-billed parrot ASM394721v1
Cucumis sativus cucumbers ASM407v2
Gasterosteus aculeatus three-spined stickleback BROAD S1
Bubo bubo Eurasian eagle-owl BubBub1.0
Buteo japonicus eastern buzzard ButJap1.0
Chlorocebus sabaeus African green monkey ChlSab1.1
Cynoglossus semilaevis tongue sole Cse_v1.0
Drosophila pseudoobscura Dpse_3.0
Jaculus jaculus Lesser Egyptian jerboa JacJac1.0
Leptotrombidium deliense LdelU1
Leersia perrieri Leersia Lperr_V1.4
Microtus ochrogaster vole MicOch1.0
Oncorhynchus kisutch coho salmon Okis_V2
Pogona vitticeps central bearded dragon pvi1.1
Dicentrarchus labrax European seabass seabass_V1.0
Trypanosoma brucei TryBru_Apr2005_chr11
Ursus maritimus Polar bear UrsMar_1.0
Puccinia graminisug99 v1
Arabidopsis lyrata lyrate rockcress v.1.0
Selaginella moellendorffii spikemoss v1.0
Daphnia pulex common water flea V1.0
Fusarium solani v2.0
Quercus lobata ValleyOak3.0
Verticillium dahliaejr2 Verticillium dahliae JR2 VDAG_JR2v.4.0
Varroa destructor gca002443255 honeybee mite Vdes_3.0
Vicugna pacos alpaca vicPac1
Vigna angularis adzuki bean Vigan1.1
Vigna radiata mung bean Vradiata_ver6
Vulpes vulpes red fox VulVul2.2
Juglans regia English walnut Walnut_2.0
Caenorhabditis elegans C.elegans WBcel235
Triticum dicoccoides wild emmer wheat WEWSeq v.1.0
Xenopus tropicalis tropical clawed frog Xenopus_tropicalis_v9.1
Xiphophorus couchianus Monterrey platyfish Xiphophorus_couchianus-4.0.1
Xiphophorus maculatus southern platyfish X_maculatus-5.0-male
Zea mays maize Zm-B73-REFERENCE-NAM-5.0
Zonotrichia albicollis white-throated sparrow Zonotrichia_albicollis-1.0.1
Zootermopsis nevadensis Nevada dampwood termite ZooNev1.0

About genomic mapping

RNAcentral imports genome locations from Ensembl, LNCipedia, miRBase, and other Expert Databases. In addition, sequences are mapped to the reference genomes downloaded from Ensembl and Ensembl Genomes using blat.

Data access

RNAcentral sequences can be viewed in their genomic context using a light-weight genome browser powered by Genoverse. External links are provided to the fully-featured genome browsers such as Ensembl, Ensembl Genomes, and UCSC genome browser.

The genomic coordinates of the RNAcentral entries can be downloaded in BED format from the FTP site or through the REST API.

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