Genomic mapping

Species with genomic mapping

Genomic mapping is available for the following 713 species:

Species Assembly
Acanthaster planci gca001949145v1 Crown-of-thorns starfish OKI_Apl_1.0
Acanthochromis polyacanthus spiny chromis ASM210954v1
Accipiter nisus Eurasian sparrowhawk Accipiter_nisus_ver1.0
Acromyrmex echinatior gca000204515v1rs Panamanian leaf-cutter ant Aech_3.9
Acropora millepora gca013753865v1 Stony coral Amil_v2.1
Actinia tenebrosa gca009602425v1 Australian red waratah sea anemone ASM960242v1
Actinidia chinensis Red5_PS1_1.69.0
Acyrthosiphon pisum gca005508785v2rs Pea aphid pea_aphid_22Mar2018_4r6ur_v2
Adelges cooleyi gca023614345v1rs Spruce gall adelgid UGA_ACOO_1.1
Adineta vaga Rotifer AMS_PRJEB1171_v1
Aedes aegypti lvpagwg Yellow fever mosquito AaegL5
Aedes albopictus Asian tiger mosquito AaloF1
Aethina tumida gca024364675v1rs Small hive beetle icAetTumi1.1
Agrilus planipennis gca000699045v2 Emerald ash borer Apla_2.0
Ailuropoda melanoleuca giant panda ASM200744v2
Albugo laibachii ENA 1
Amazona collaria yellow-billed parrot ASM394721v1
Amblyteles armatorius gca933228735v1 Ichneumon Wasp iyAmbArma2.1
Amborella trichopoda Amborella AMTR1.0
Amphibalanus amphitrite gca019059575v1 Acorn barnacle NRLGWU_Aamphi_draft
Amphilophus citrinellus Midas cichlid Midas_v5
Amphimedon queenslandica gca000090795v2rs Demosponge v1.1
Amphiprion ocellaris clown anemonefish AmpOce1.0
Amphiprion percula orange clownfish Nemo_v1
Amyelois transitella gca001186105v1rs Naval orange worm ASM118610v1
Anabas testudineus climbing perch fAnaTes1.2
Ananas comosus F153
Anas platyrhynchos platyrhynchos common mallard CAU_duck1.0
Anas zonorhyncha Eastern spot-billed duck ASM222487v1
Ancistrocerus nigricornis gca916049575v1 Potter wasp iyAncNigr1.1
Anneissia japonica gca011630105v1 Sea lily ASM1163010v1
Anolis carolinensis green anole AnoCar2.0v2
Anopheles albimanus Mosquito AalbS2
Anopheles arabiensis Mosquito AaraD1
Anopheles christyi Mosquito AchrA1
Anopheles coluzzii Mosquito AcolM1
Anopheles culicifacies Mosquito AculA1
Anopheles darlingi American malaria mosquito AdarC3
Anopheles dirus Mosquito AdirW1
Anopheles epiroticus Mosquito AepiE1
Anopheles farauti Mosquito AfarF2
Anopheles funestus African malaria mosquito AfunF3
Anopheles gambiae African malaria mosquito AgamP4
Anopheles maculatus Mosquito AmacM1
Anopheles melas Mosquito AmelC2
Anopheles merus Mosquito AmerM2
Anopheles minimus Mosquito AminM1
Anopheles quadriannulatus Mosquito AquaS1
Anopheles sinensis china Mosquito AsinC2
Anopheles stephensi Asian malaria mosquito AsteS1
Anser brachyrhynchus pink-footed goose ASM259213v1
Anser cygnoides swan goose GooseV1.0
Anthonomus grandis gca022605725v3rs Boll weevil icAntGran1.3
Aotus nancymaae Ma's night monkey Anan_2.0
Aphanomyces astaci GCA000520075v1
Aphanomyces invadans GCA000520115v1
Aphidius gifuensis gca014905175v1 Parasitoid wasp ASM1490517v1
Apis dorsata gca000469605v1rs Giant honeybee Apis_dorsata_1.3
Apis florea gca000184785v2rs Dwarf honeybee Aflo_1.0
Apis mellifera Honey bee Amel_HAv3.1
Aplysia californica gca000002075v2 California sea hare AplCal3.0
Apteryx haastii Great spotted kiwi aptHaa1
Apteryx owenii little spotted kiwi aptOwe1
Apteryx rowi Okarito brown kiwi aptRow1
Aquila chrysaetos chrysaetos golden eagle bAquChr1.2
Arabidopsis halleri Ahal2.2
Arabidopsis lyrata lyrate rockcress v.1.0
Arabidopsis thaliana thale-cress TAIR10
Arabis alpina A_alpina_V4
Ashbya gossypii ASM9102v1
Asparagus officinalis Aspof.V1
Aspergillus clavatus ASM271v1
Aspergillus flavus JCVI-afl1-v2.0
Aspergillus fumigatus ASM265v1
Aspergillus fumigatusa1163 ASM15014v1
Aspergillus nidulans ASM1142v1
Aspergillus niger ASM285v2
Aspergillus oryzae ASM18445v3
Aspergillus terreus ASM14961v1
Astatotilapia calliptera eastern happy fAstCal1.2
Astyanax mexicanus Mexican tetra Astyanax_mexicanus-2.0
Athalia rosae gca000344095v2 Coleseed sawfly Aros_2.0
Athene cunicularia burrowing owl athCun1
Atta cephalotes Leaf-cutter ant Attacep1.0
Avena sativa ot3098 Oat_OT3098_v2
Bactrocera dorsalis gca000789215v2 Oriental fruit fly ASM78921v2
Bactrocera latifrons gca001853355v1 Solanum fruit fly ASM185335v1
Bactrocera tryoni gca016617805v2 Queensland fruitfly CSIRO_BtryS06_freeze1
Balaenoptera musculus Blue whale mBalMus1.v2
Beauveria bassiana ASM168263v1
Belgica antarctica Antarctic midge ASM77530v1
Bemisia tabaci asiaii5 Silverleaf whitefly ASIAII5_n227_616Mb
Beta vulgaris sugar beet RefBeet-1.2.2
Betta splendens Siamese fighting fish fBetSpl5.2
Bicyclus anynana gca900239965v1rs Squinting bush brown Bicyclus_anynana_v1.2
Bigelowiella natans Bigna1
Biomphalaria glabrata Bloodfluke planorb BglaB1
Bison bison bison American bison Bison_UMD1.0
Blumeria graminis EF2
Bombus huntii gca024542735v1rs Hunt's bumblebee iyBomHunt1.1
Bombus terrestris Buff-tailed bumblebee Bter_1.0
Bombus vancouverensis gca011952275v1rs Montane Bumble Bee Bvanc_JDL1245
Bombyx mandarina gca003987935v1rs Wild silkworm ASM398793v1
Bos grunniens domestic yak LU_Bosgru_v3.0
Bos indicus hybrid hybrid cattle UOA_Brahman_1
Bos mutus wild yak BosGru_v2.0
Bos taurus cattle ARS-UCD1.3
Botrytis cinerea ASM83294v1
Brachypodium distachyon false brome Brachypodium_distachyon_v3.0
Branchiostoma lanceolatum Amphioxus BraLan2
Brassica juncea eudicots ASM1870372v1
Brassica napus oilseed rape AST_PRJEB5043_v1
Brassica oleracea wild cabbage BOL
Brassica rapa ro18 field mustard SCU_BraROA_2.3
Bubo bubo Eurasian eagle-owl BubBub1.0
Buteo japonicus eastern buzzard ButJap1.0
Caenorhabditis elegans C.elegans WBcel235
Cairina moschata domestica muscovy Duck (domestic type) CaiMos1.0
Cajanus cajan pigeon pea C.cajan_V1.0
Calidris pugnax ruff ASM143184v1
Calidris pygmaea Spoon-billed sandpiper ASM369795v1
Callithrix jacchus white-tufted-ear marmoset mCalJac1.pat.X
Callorhinchus milii elephant shark Callorhinchus_milii-6.1.3
Camarhynchus parvulus small tree finch Camarhynchus_parvulus_V1.1
Camelina sativa Cs
Camelus dromedarius Arabian camel CamDro2
Camponotus floridanus gca003227725v1rs Florida carpenter ant Cflo_v7.5
Candida albicans GCA000182965v3
Candida auris GCA002759435v2
Candida duobushaemulonis GCA002926085v1
Candida glabrata GCA000002545v2
Candida haemuloni GCA002926055v1
Candida parapsilosis GCA000182765v2
Candida pseudohaemulonis GCA003013735v1
Candida tropicalis GCA000006335v3
Canis lupus dingo dingo ASM325472v1
Canis lupus familiaris dog ROS_Cfam_1.0
Capitella teleta Bristle worm Capitella teleta v1.0
Capra hircus blackbengal Goat CVASU_BBG_1.0
Capsicum annuum ASM51225v2
Carassius auratus goldfish ASM336829v1
Carlito syrichta Philippine tarsier Tarsius_syrichta-2.0.1
Castor canadensis American beaver C.can_genome_v1.0
Cataglyphis hispanica gca021464435v1rs Desert ant ULB_Chis1_1.0
Catagonus wagneri Chacoan peccary CatWag_v2_BIUU_UCD
Catharus ustulatus Swainson's thrush bCatUst1.pri
Cavia aperea Brazilian guinea pig CavAp1.0
Cavia porcellus domestic guinea pig Cavpor3.0
Cebus imitator Panamanian white-faced capuchin Cebus_imitator-1.0
Centruroides sculpturatus gca000671375v2 Bark scorpion Cexi_2.0
Ceratitis capitata gca000347755v4 Mediterranean fruit fly Ccap_2.0
Cercocebus atys Sooty mangabey Caty_1.0
Cervus hanglu yarkandensis Yarkand deer CEY_v1
Chara braunii Cbr_1.0
Chelonoidis abingdonii Abingdon island giant tortoise ASM359739v1
Chelonus insularis gca013357705v1rs Parasitoid wasp ASM1335770v1
Chelydra serpentina Common snapping turtle Chelydra_serpentina-1.0
Chenopodium quinoa ASM168347v1
Chinchilla lanigera Long-tailed chinchilla ChiLan1.0
Chlamydomonas reinhardtii chlamy Chlamydomonas_reinhardtii_v5.5
Chlorocebus sabaeus African green monkey ChlSab1.1
Choloepus hoffmanni Hoffmann's two-fingered sloth choHof1
Chondrus crispus Irish moss ASM35022v2
Chrysemys picta bellii Western painted turtle Chrysemys_picta_bellii-3.0.3
Chrysolophus pictus golden pheasant Chrysolophus_pictus_GenomeV1.0
Cimex lectularius Bed bug Clec_2.0
Ciona intestinalis Sea squirt Ciona intestinalis KH
Ciona savignyi Sea squirt Ciona savignyi CSAV 2.0
Citrullus lanatus Cla97_v1
Citrus clementina Citrus_clementina_v1.0
Clupea harengus Atlantic herring Ch_v2.0.2
Clytia hemisphaerica gca902728285 Jellyfish Clytia_hemisphaerica_genome_assembly
Coffea canephora AUK_PRJEB4211_v1
Colletotrichum gloeosporioides Colletotrichum gloeosporioides Nara gc-5
Colletotrichum graminicola C_graminicola_M1_001_V1
Colletotrichum higginsianum ASM31379v2
Colletotrichum orbiculare Corbiculare240422v01
Colobus angolensis palliatus Angola colobus Cang.pa_1.0
Copidosoma floridanum gca000648655v2 Parasitoid wasp Cflo_2.0
Corchorus capsularis jute CCACVL1_1.0
Corvus moneduloides New Caledonian crow bCorMon1.pri
Corylus avellana European hazelnut CavTom2PMs-1.0
Corymbia citriodora lemon-scented gum Ccitriodora_v2_1
Cotesia glomerata gca020080835v1 White butterfly parasite wasp MPM_Cglom_v2.3
Cottoperca gobio channel bull blenny fCotGob3.1
Coturnix japonica Japanese quail Coturnix_japonica_2.0
Crassostrea angulata gca025612915v2rs Portuguese oyster ASM2561291v2
Crassostrea gigas Pacific oyster cgigas_uk_roslin_v1
Crassostrea virginica gca002022765v4 Eastern oyster C_virginica_3.0
Cricetulus griseus crigri Chinese hamster CriGri_1.0
Crocodylus porosus Australian saltwater crocodile CroPor_comp1
Cryptococcus neoformans ASM9104v1
Cryptotermes secundus gca002891405v2rs Drywood termite Csec_1.0
Cucumis melo Melonv4
Cucumis sativus cucumbers ASM407v2
Culex quinquefasciatus Southern house mosquito CpipJ2
Culicoides sonorensis Biting midge Cson1
Cyanidioschyzon merolae haploid red algae ASM9120v1
Cyanistes caeruleus blue tit cyaCae2
Cyclopterus lumpus lumpfish fCycLum1.pri
Cynara cardunculus CcrdV1
Cynoglossus semilaevis tongue sole Cse_v1.0
Cyprinodon variegatus sheepshead minnow C_variegatus-1.0
Cyprinus carpio carpio common carp Cypcar_WagV4.0
Daktulosphaira vitifoliae gca025091365v1rs Grape phylloxera ASM2509136v1
Danio rerio zebrafish GRCz11
Daphnia magna gca020631705v2 Fresh water planktonic ASM2063170v1.1
Daphnia pulex Common water flea V1.0
Daphnia pulicaria gca021234035v2rs Water flea SC_F0_13B
Dasypus novemcinctus nine-banded armadillo Dasnov3.0
Daucus carota carrots ASM162521v1
Delphinapterus leucas beluga whale ASM228892v3
Dendroctonus ponderosae gca000355655v1 Mountain pine beetle DendPond_male_1.0
Dendronephthya gigantea gca004324835v1 Carnation coral DenGig_1.0
Denticeps clupeoides denticle herring fDenClu1.1
Dermacentor andersoni gca023375885v2rs Rocky Mountain wood tick qqDerAnde1.2
Dermacentor silvarum gca013339745v2rs Tick BIME_Dsil_1.4
Dermatophagoides pteronyssinus gca001901225v2 European house dust mite ASM190122v2
Diabrotica virgifera gca003013835v2 Western corn rootworm Dvir_v2.0
Dicentrarchus labrax European seabass dlabrax2021
Dictyostelium discoideum dicty_2.7
Digitaria exilis monocots Fonio_CM05836
Dimorphilus gyrociliatus gca904063045v1 Segmented worms Dgyrociliatus_assembly
Dinothrombium tinctorium Red velvet mite DtinU1
Dioscorea rotundata TDr96_F1_v2_PseudoChromosome
Dipodomys ordii Ord's kangaroo rat Dord_2.0
Diuraphis noxia gca001186385v1 Russian wheat aphid Dnoxia_1.0
Dothistroma septosporum Dothistroma septosporum NZE10 v1.0
Dreissena polymorpha gca020536995v1rs Zebra mussle UMN_Dpol_1.0
Dromaius novaehollandiae emu droNov1
Drosophila ananassae Fruit fly dana_caf1
Drosophila erecta Fruit fly dere_caf1
Drosophila grimshawi Fruit fly dgri_caf1
Drosophila melanogaster Fruit fly BDGP6.46
Drosophila mojavensis Fruit fly dmoj_caf1
Drosophila persimilis Fruit fly dper_caf1
Drosophila pseudoobscura Fruit fly Dpse_3.0
Drosophila sechellia Fruit fly dsec_caf1
Drosophila simulans Fruit fly ASM75419v3
Drosophila virilis Fruit fly dvir_caf1
Drosophila willistoni Fruit fly dwil_caf1
Drosophila yakuba Fruit fly dyak_caf1
Dufourea novaeangliae gca001272555v1rs Bee ASM127255v1
Echeneis naucrates live sharksucker fEcheNa1.1
Echinochloa crusgalli monocots ec_v3
Echinococcus granulosus gca000524195v1rs Dog tapeworm ASM52419v1
Echinops telfairi small Madagascar hedgehog TENREC
Electrophorus electricus electric eel Ee_SOAP_WITH_SSPACE
Emiliania huxleyi Emiliana huxleyi CCMP1516 main genome assembly v1.0
Entamoeba histolytica JCVI-ESG2-1.0
Eptatretus burgeri Inshore hagfish Eburgeri_3.2
Equus asinus ass ASM1607732v2
Equus caballus horse EquCab3.0
Eragrostis curvula CERZOS_E.curvula1.0
Eragrostis tef tef Salk_teff_dabbi_3.0
Erinaceus europaeus western European hedgehog eriEur1
Erpetoichthys calabaricus reedfish fErpCal1.1
Erythrura gouldiae Gouldian finch GouldianFinch
Esox lucius northern pike Eluc_v4
Eucalyptus grandis Egrandis1_0
Eufriesea mexicana gca001483705v1rs Bee ASM148370v1
Eurytemora affinis gca000591075v2 Calanoid copepod Eaff_2.0
Eutrema salsugineum Eutsalg1_0
Exaiptasia diaphana gca001417965v1 Sea anemone Aiptasia_genome_1.1
Falco tinnunculus common kestrel FalTin1.0
Felis catus domestic cat Felis_catus_9.0
Ficedula albicollis Collared flycatcher FicAlb1.5
Ficus carica common fig UNIPI_FiCari_1.0
Folsomia candida Springtail ASM221717v1
Fraxinus excelsior European ash BATG-0.5
Fukomys damarensis Damara mole rat DMR_v1.0
Fundulus heteroclitus mummichog Fundulus_heteroclitus-3.0.2
Fusarium culmorum Fusarium culmorum UK99 EF 1
Fusarium oxysporum FO2
Fusarium pseudograminearum FP7
Fusarium solani v2.0
Fusarium verticillioides ASM14955v1
Gadus morhua Atlantic cod gadMor3.0
Gaeumannomyces graminis Gae_graminis_V2
Galdieria sulphuraria red algae ASM34128v1
Galendromus occidentalis gca000255335v2rs Western predatory mite Mocc_1.0
Galleria mellonella gca003640425v2rs Greater wax moth ASM364042v2
Gallus gallus chicken bGalGal1.mat.broiler.GRCg7b
Gambusia affinis western mosquitofish ASM309773v1
Gasterosteus aculeatus three-spined stickleback BROAD S1
Geospiza fortis medium ground-finch GeoFor_1.0
Giardia lamblia GL2
Gigantopelta aegis gca016097555v1 Deep sea snail Gae_host_genome
Globisporangium ultimum GCA000143045v1
Glossina austeni Tsetse fly GausT1
Glossina brevipalpis Tsetse fly GbreI1
Glossina morsitans Tsetse fly GmorY1
Glossina pallidipes Tsetse fly GpalI1
Glossina palpalis Tsetse fly GpapI1
Glycine max soybeans Glycine_max_v2.1
Glyphotaelius pellucidus gca936435175v1 Caddisflies iiGlyPell1.1
Gopherus agassizii Agassiz's desert tortoise ASM289641v1
Gopherus evgoodei Goodes thornscrub tortoise rGopEvg1_v1.p
Gorilla gorilla Western Lowland Gorilla gorGor4
Gossypium raimondii Graimondii2_0_v6
Gouania willdenowi blunt-snouted clingfish fGouWil2.1
Guillardia theta Guith1
Habropoda laboriosa gca001263275v1rs Southeastern blueberry bee ASM126327v1
Haemaphysalis longicornis gca013339765v1 Longhorned tick ASM1333976v1
Haliotis rubra gca003918875v1rs Blacklip abalone ASM391887v1
Haliotis rufescens gca023055435v1rs Red abalone xgHalRufe1.0.p
Haplochromis burtoni Burton's mouthbrooder AstBur1.0
Harpegnathos saltator gca003227715v2rs Indian jumping ant Hsal_v8.5
Helianthus annuus common sunflower HanXRQr2.0-SUNRISE
Heliconius melpomene Postman butterfly Hmel1
Helicoverpa armigera gca023701775v1rs Cotton bollworm HaSCD2
Helicoverpa zea gca022581195v1rs Corn earworm ilHelZeax1.1
Helobdella robusta Freshwater leech Helro1
Hermetia illucens gca905115235v1 Black soldier fly iHerIll2.2.curated.20191125
Heterocephalus glaber male naked mole-rat Naked_mole-rat_paternal
Hippocampus comes tiger tail seahorse H_comes_QL1_v1
Histoplasma capsulatum GCA000170615v1
Hofstenia miamia Panther worm HmiaM1
Homalodisca vitripennis gca021130785v2rs Glassy winged sharpshooter UT_GWSS_2.1
Homarus americanus gca018991925v1 American lobster GMGI_Hamer_2.0
Homo sapiens human GRCh38.p14
Hordeum vulgare domesticated barley MorexV3_pseudomolecules_assembly
Hucho hucho huchen ASM331708v1
Hyalella azteca gca000764305v2 Amphipod Hazt_2.0
Hyalomma asiaticum gca013339685v1 Tick ASM1333968v1
Hyaloperonospora arabidopsidis HyaAraEmoy2_2.0
Hydra vulgaris gca000004095v1 Swiftwater hydra Hydra_RP_1.0
Hypsibius exemplaris gca002082055v1 Water bear tardigrade nHd_3.1
Ichneumon xanthorius gca917499995v1 Ichneumon Wasp iyIchXant1.1
Ictalurus punctatus channel catfish IpCoco_1.2
Ictidomys tridecemlineatus thirteen-lined ground squirrel SpeTri2.0
Ipomoea triloba ASM357664v1
Ixodes persulcatus gca013358835v1 Taiga tick BIME_Iper_1.3
Ixodes scapularis Black-legged tick IscaW1
Jaculus jaculus Lesser Egyptian jerboa JacJac1.0
Juglans regia English walnut Walnut_2.0
Junco hyemalis dark-eyed junco ASM382977v1
Kalanchoe fedtschenkoi K_fedtschenkoi_M2_v1
Komagataella pastoris ASM2700v1
Kryptolebias marmoratus mangrove rivulus ASM164957v1
Labrus bergylta ballan wrasse BallGen_V1
Lactuca sativa eudicots Lsat_Salinas_v7
Larimichthys crocea large yellow croaker L_crocea_2.0
Lates calcarifer barramundi perch ASB_HGAPassembly_v1
Laticauda laticaudata blue-ringed sea krait latLat_1.0
Latimeria chalumnae coelacanth LatCha1
Leersia perrieri Leersia Lperr_V1.4
Leguminivora glycinivorella gca023078275v1rs Soybean pod borer LegGlyc_1.1
Leishmania major ASM272v2
Lepeophtheirus salmonis gca016086655v3rs Salmon louse UVic_Lsal_1.0
Lepidothrix coronata blue-crowned manakin Lepidothrix_coronata-1.0
Lepisosteus oculatus Spotted gar LepOcu1
Leptinotarsa decemlineata gca000500325v2 Colorado potato beetle Ldec_2.0
Leptobrachium leishanense Leishan spiny toad ASM966780v1
Leptosphaeria maculans ASM23037v1
Leptotrombidium deliense Harvest mite LdelU1
Limnephilus lunatus gca917563855v2 Caddisflies iiLimLuna2.2
Limnephilus marmoratus gca917880885v1 Caddisflies iiLimMarm1.1
Limnephilus rhombicus gca929108145v2 Caddisflies iiLimRhom1.2
Limnoperna fortunei gca944474755v1 Golden mussle xbLimFort5.1
Limulus polyphemus gca000517525v1 Atlantic horseshoe crab Limulus_polyphemus_2.1.2
Linepithema humile gca000217595v1rs Argentine ant Lhum_UMD_V04
Lineus longissimus gca910592395v2 Bootlace worm tnLinLong1.2
Lingula anatina gca001039355v2 Lamp shell LinAna2.0
Loa loa Eye worm Loa_loa_V3
Lolium perenne perennial ryegrass MPB_Lper_Kyuss_1697
Lonchura striata domestica Bengalese finch LonStrDom1
Lottia gigantea Owl limpet Lotgi1
Loxodonta africana African savanna elephant Loxafr3.0
Lucilia cuprina Australian sheep blowfly ASM118794v1
Lupinus angustifolius blue lupin LupAngTanjil_v1.0
Lutzomyia longipalpis Sand fly LlonJ1
Lynx canadensis Canada lynx mLynCan4_v1.p
Lytechinus variegatus gca018143015v1 Green sea urchin Lvar_3.0
Macaca fascicularis Crab-eating macaque Macaca_fascicularis_6.0
Macaca mulatta Macaque Mmul_10
Macaca nemestrina Pig-tailed macaque Mnem_1.0
Macrosteles quadrilineatus gca028750875v1rs Aster leafhopper UCM_ALF_1.0
Magnaporthe oryzae MG8
Magnaporthe poae Mag_poae_ATCC_64411_V1
Malurus cyaneus samueli superb fairywren mCya_1.0
Malus domestica golden ASM211411v1
Manacus vitellinus golden-collared manakin ASM171598v2
Mandrillus leucophaeus Drill Mleu.le_1.0
Manduca sexta gca014839805v1rs Tobacco hornworm JHU_Msex_v1.0
Manihot esculenta cassava Manihot esculenta v6
Marchantia polymorpha Marchanta_polymorpha_v1
Marmota marmota marmota Alpine marmot marMar2.1
Mastacembelus armatus zig-zag eel fMasArm1.2
Mayetiola destructor Hessian fly Mdes_1.0
Maylandia zebra zebra mbuna M_zebra_UMD2a
Medicago truncatula barrel medic MedtrA17_4.0
Megachile rotundata gca000220905v1rs Alfalfa leafcutting bee MROT_1.0
Megaselia scalaris Coffin fly Msca1
Melampsora laricipopulina v1.0
Meleagris gallopavo turkey Turkey_5.1
Melitaea cinxia Glanville fritillary MelCinx1.0
Melopsittacus undulatus budgerigar bMelUnd1.mat.Z
Mercenaria mercenaria gca014805675v2 Hard clam (quahog) ASM1480567v1.1
Meriones unguiculatus Mongolian gerbil MunDraft-v1.0
Mesocricetus auratus Golden Hamster MesAur1.0
Microbotryum violaceum M_violaceum_V1
Microcebus murinus gray mouse lemur Mmur_3.0
Microtus ochrogaster vole MicOch1.0
Mizuhopecten yessoensis gca002113885v2 Yesso scallop ASM211388v2
Mnemiopsis leidyi Warty comb jelly MneLei_Aug2011
Mola mola ocean sunfish ASM169857v1
Monodelphis domestica gray short-tailed opossum ASM229v1
Monodon monoceros narwhal NGI_Narwhal_1
Monomorium pharaonis gca013373865v2 Pharaoh ant ASM1337386v2
Monopterus albus swamp eel M_albus_1.0
Moschus moschiferus Siberian musk deer MosMos_v2_BIUU_UCD
Musa acuminata wild Malaysian banana Musa_acuminata_v2
Musca domestica House fly MdomA1
Mus caroli Ryukyu mouse CAROLI_EIJ_v1.1
Mus musculus mouse GRCm39
Mus pahari Shrew mouse PAHARI_EIJ_v1.1
Mus spicilegus steppe mouse MUSP714
Mus spretus algerian mouse SPRET_EiJ_v1
Mustela putorius furo Domestic ferret MusPutFur1.0
Mya arenaria gca026914265v1rs Soft-shell clam ASM2691426v1
Myotis lucifugus little brown bat Myoluc2.0
Myripristis murdjan pinecone soldierfish fMyrMur1.1
Naja naja Indian cobra Nana_v5
Nannospalax galili Upper Galilee mountains blind mole rat S.galili_v1.0
Nasonia vitripennis Jewel wasp Nvit_psr_1.1
Nematostella vectensis Starlet sea anemone ASM20922v1
Neodiprion lecontei gca021901455v1rs Redheaded pine sawfly iyNeoLeco1.1
Neodiprion pinetum gca021155775v1rs White pine sawfly iyNeoPine1.1
Neogobius melanostomus round goby RGoby_Basel_V2
Neolamprologus brichardi lyretail cichlid NeoBri1.0
Neosartorya fischeri ASM14964v1
Neovison vison American mink NNQGG.v01
Neurospora crassa NC12
Nicotiana attenuata coyote tobacco NIATTr2
Nilaparvata lugens gca014356525v1rs Brown planthopper ASM1435652v1
Nomascus leucogenys Northern white-cheeked gibbon Nleu_3.0
Notamacropus eugenii tammar wallaby Meug_1.0
Notechis scutatus mainland tiger snake TS10Xv2-PRI
Nothobranchius furzeri turquoise killifish Nfu_20140520
Nothoprocta perdicaria Chilean tinamou notPer1
Numida meleagris helmeted guineafowl NumMel1.0
Nymphaea colorata ASM883128v1
Ochotona princeps American pika OchPri2.0-Ens
Octodon degus Degu OctDeg1.0
Octopus bimaculoides California two-spot octopus PRJNA270931
Octopus sinensis gca006345805v1 East Asian common octopus ASM634580v1
Olea europaea olive OLEA9
Olea europaea sylvestris olive O_europaea_v1
Oncorhynchus kisutch coho salmon Okis_V2
Oncorhynchus mykiss rainbow trout USDA_OmykA_1.1
Oncorhynchus tshawytscha Chinook salmon Otsh_v1.0
Onthophagus taurus gca000648695v2 Dung beetle Otau_2.0
Ooceraea biroi gca003672135v1 Clonal raider ant Obir_v5.4
Oppia nitens gca028296485v1rs Oribatid soil mite nextdenovo_longstitch_racon4_pilon3
Orbicella faveolata gca002042975v1 Mountainous star coral ofav_dov_v1
Orchesella cincta Springtail ASM171814v1
Oreochromis aureus blue tilapia ASM587006v1
Oreochromis niloticus Nile tilapia O_niloticus_UMD_NMBU
Ornithorhynchus anatinus platypus mOrnAna1.p.v1
Orussus abietinus gca000612105v2 Parasitic wood wasp Oabi_2.0
Oryctolagus cuniculus rabbit OryCun2.0
Oryza barthii African wild rice O.barthii_v1
Oryza brachyantha malo sina Oryza_brachyantha.v1.4b
Oryza glaberrima African rice Oryza_glaberrima_V1
Oryza glumipatula South American wild rice Oryza_glumaepatula_v1.5
Oryza indica Indian rice ASM465v1
Oryza longistaminata long-staminate rice O_longistaminata_v1.0
Oryza meridionalis Australian wild rice Oryza_meridionalis_v1.3
Oryza nivara weedy rice Oryza_nivara_v1.0
Oryza punctata red rice Oryza_punctata_v1.2
Oryza rufipogon common wild rice OR_W1943
Oryza sativa Japanese rice IRGSP-1.0
Oryza sativa arc Aromatic rice Os117425RS1
Oryza sativa azucena Japonica rice AzucenaRS1
Oryza sativa n22 Aus rice OsN22RS2
Oryzias javanicus javanese ricefish OJAV_1.1
Oryzias latipes Japanese medaka HdrR ASM223467v1
Oryzias melastigma Indian medaka Om_v0.7.RACA
Oryzias sinensis Chinese medaka ASM858656v1
Ostrea edulis gca023158985v1rs European flat oyster OEROSLIN_1.1
Ostreococcus lucimarinus green algae ASM9206v1
Otolemur garnettii small-eared galago OtoGar3
Otus sunia Oriental scops-owl OtuSun1.0
Ovis aries sheep Oar_v3.1
Owenia fusiformis gca903813345v1 Segmented worms Owenia_assembly_annotated
Panicum hallii Panicgrass PhalliiHAL_v2.1
Panicum hallii fil2 Panicgrass PHallii_v3.1
Panonychus citri gca014898815v1rs Citrus red mite ASM1489881v1
Pan paniscus bonobo panpan1.1
Panthera leo lion PanLeo1.0
Panthera pardus leopard PanPar1.0
Panthera tigris altaica Tiger PanTig1.0
Pan troglodytes chimpanzee Pan_tro_3.0
Papaver somniferum ASM357369v1
Papio anubis olive baboon Panubis1.0
Parambassis ranga Indian glassy fish fParRan2.1
Paramecium tetraurelia ASM16542v1
Paramormyrops kingsleyae Paramormyrops kingsleyae PKINGS_0.1
Parasteatoda tepidariorum gca000365465v3 Common house spider Ptep_3.0
Parus major Great Tit Parus_major1.1
Patella pellucida gca917208275v1 Blue-rayed limpet xgPatPell1.1
Patella vulgata gca932274485v1 Common limpet xgPatVulg1.1
Patiria miniata gca015706575v1 Bat star starfish Pmin_3.0
Pavo cristatus Indian peafowl AIIM_Pcri_1.0
Pectinophora gossypiella gca024362695v1rs Pink bollworm ilPecGoss1.1
Pediculus humanus Human body louse PhumU2
Pelodiscus sinensis Chinese softshell turtle PelSin_1.0
Pelusios castaneus West African mud turtle Pelusios_castaneus-1.0
Penaeus chinensis gca019202785v2rs Fleshy prawn ASM1920278v2
Penaeus japonicus gca017312705v1 Kuruma shrimp Mj_TUMSAT_v1.0
Penaeus monodon gca015228065v1 Black tiger shrimp NSTDA_Pmon_1
Penaeus vannamei gca003789085v1 Pacific white shrimp ASM378908v1
Periophthalmus magnuspinnatus Periophthalmus magnuspinnatus PM.fa
Peromyscus maniculatus bairdii Northern American deer mouse HU_Pman_2.1
Petromyzon marinus sea lamprey Pmarinus_7.0
Phaeodactylum tricornutum Phaeodactylum tricornutum ASM15095v2
Phaeosphaeria nodorum ASM14691v1
Phanerochaete chrysosporium GCA000167175v1
Phascolarctos cinereus koala phaCin_unsw_v4.1
Phaseolus vulgaris French bean PhaVulg1_0
Phasianus colchicus Ring-necked pheasant ASM414374v1
Phlebotomus papatasi Sand fly PpapI1
Phocoena sinus vaquita mPhoSin1.pri
Physcomitrium patens moss Phypa V3
Physeter catodon sperm whale ASM283717v2
Phytophthora infestans potato late blight agent ASM14294v1
Phytophthora kernoviae PhyKer238/432v1
Phytophthora lateralis MPF4_v1.0
Phytophthora parasitica Phyt_para_P1569_V1
Phytophthora ramorum Sudden oak death agent ASM14973v1
Phytophthora sojae P.sojae V3.0
Piliocolobus tephrosceles Ugandan red Colobus ASM277652v2
Pistacia vera PisVer_v2
Pisum sativum pea Pisum_sativum_v1a
Plasmodium berghei PBANKA01
Plasmodium chabaudi PCHAS01
Plasmodium falciparum ASM276v2
Plasmodium knowlesi ASM635v1
Plasmodium vivax ASM241v2
Pocillopora damicornis gca003704095v1 Cauliflower coral ASM370409v1
Podarcis muralis common wall lizard PodMur_1.0
Poecilia formosa Amazon molly Poecilia_formosa-5.1.2
Poecilia latipinna sailfin molly P_latipinna-1.0
Poecilia mexicana shortfin molly P_mexicana-1.0
Poecilia reticulata guppy Guppy_female_1.0_MT
Pogona vitticeps central bearded dragon pvi1.1
Pogonomyrmex barbatus gca000187915v1rs Red harvester ant Pbar_UMD_V03
Polistes canadensis gca001313835v1rs Red paper wasp ASM131383v1
Polistes dominula gca001465965v1rs European paper wasp Pdom_r1.2
Polistes fuscatus gca010416935v1rs Common paper wasp CU_Pfus_HIC
Pollicipes pollicipes gca011947565v2 Goose neck barnacle Ppol_2
Pomacea canaliculata gca003073045v1 Apple snail ASM307304v1
Pomphorhynchus laevis gca012934845v2gb Thorny-headed worm ASM1293484v2
Pongo abelii Sumatran orangutan Susie_PABv2
Populus trichocarpa Populus trichocarpa Pop_tri_v4
Portunus trituberculatus gca017591435v1 Swimming crab ASM1759143v1
Priapulus caudatus gca000485595v2 Penis worm Priapulus_caudatus-5.0.1
Procambarus clarkii gca020424385v2 Red swamp crayfish ASM2042438v2
Procavia capensis cape rock hyrax proCap1
Prolemur simus greater bamboo lemur Prosim_1.0
Propithecus coquereli Coquerel's sifaka Pcoq_1.0
Prunus avium PAV_r1.0
Prunus dulcis ALMONDv2
Prunus persica peach Prunus_persica_NCBIv2
Pseudonaja textilis eastern brown snake EBS10Xv2-PRI
Pseudonitzschia multistriata ASM90066040v1
Pteropus vampyrus large flying fox pteVam1
Puccinia graminis ASM14992v1
Puccinia graminisug99 v1
Puccinia striiformis PST-130_1.0
Puccinia triticina ASM15152v1
Pundamilia nyererei Makobe Island cichlid PunNye1.0
Pygocentrus nattereri red-bellied piranha Pygocentrus_nattereri-1.0.2
Pyrenophora teres PyrTer_1.0
Pyrenophora triticirepentis ASM14998v1
Pyricularia oryzae GCA900474545v2
Pythium aphanidermatum pag1_scaffolds_v1
Pythium arrhenomanes par_scaffolds_v1
Pythium irregulare pir_scaffolds_v1
Pythium iwayamai piw_scaffolds_v1
Pythium ultimum pug
Pythium vexans pve_scaffolds_v1
Quercus lobata ValleyOak3.0
Quercus suber cork oak CorkOak1.0
Rattus norvegicus Norway rat mRatBN7.2
Rhagoletis pomonella gca013731165v1 Apple magot fly Rhpom_1.0
Rhinolophus ferrumequinum greater horseshoe bat mRhiFer1_v1.p
Rhinopithecus bieti Black snub-nosed monkey ASM169854v1
Rhinopithecus roxellana Golden snub-nosed monkey Rrox_v1
Rhipicephalus microplus gca013339725v1 Southern cattle tick ASM1333972v1
Rhipicephalus sanguineus gca013339695v1 Brown dog tick ASM1333969v1
Rhodnius prolixus Kissing bug RproC3
Rhopalosiphum maidis gca003676215v3 Corn leaf aphid ASM367621v3
Rosa chinensis RchiOBHm-V2
Saccharomyces cerevisiae baker's yeast R64-1-1
Saccharum spontaneum Sspon.HiC_chr_asm
Saccoglossus kowalevskii gca000003605v1 Acorn worm Skow_1.1
Saimiri boliviensis boliviensis Bolivian squirrel monkey SaiBol1.0
Salarias fasciatus jewelled blenny fSalaFa1.1
Salmo salar Atlantic salmon Ssal_v3.1
Salmo trutta brown trout fSalTru1.1
Salvator merianae Argentine black and white tegu HLtupMer3
Sander lucioperca pike-perch SLUC_FBN_1
Sarcophilus harrisii Tasmanian devil mSarHar1.11
Schistocerca americana gca021461395v2rs American grasshopper iqSchAmer2.1
Schistocerca cancellata gca023864275v2rs South American locust iqSchCanc2.1
Schistocerca gregaria gca023897955v2rs Grasshoppers iqSchGreg1.2
Schistocerca nitens gca023898315v2rs Vagrant locust iqSchNite1.1
Schistocerca piceifrons gca021461385v2rs Central American locust iqSchPice1.1
Schistocerca serialis gca023864345v3rs Grasshoppers iqSchSeri2.2
Schistosoma haematobium gca000699445v2rs Urinary blood fluke SchHae_2.0
Schizosaccharomyces cryophilus SCY4
Schizosaccharomyces japonicus SJ5
Schizosaccharomyces octosporus SO6
Schizosaccharomyces pombe ASM294v2
Sciurus vulgaris Eurasian red squirrel mSciVul1.1
Scleropages formosus Asian bonytongue fSclFor1.1
Sclerotinia sclerotiorum ASM14694v1
Scophthalmus maximus turbot ASM1334776v1
Secale cereale rye Rye_Lo7_2018_v1p1p1
Selaginella moellendorffii spikemoss v1.0
Serinus canaria common canary SCA1
Seriola dumerili greater amberjack Sdu_1.0
Seriola lalandi dorsalis yellowtail amberjack Sedor1
Sesamum indicum S_indicum_v1.0
Setaria italica foxtail millet Setaria_italica_v2.0
Setaria viridis Setaria_viridis_v2.0
Sinocyclocheilus anshuiensis blind barbel SAMN03320099.WGS_v1.1
Sinocyclocheilus grahami golden-line barbel SAMN03320097.WGS_v1.1
Sinocyclocheilus rhinocerous horned golden-line barbel SAMN03320098_v1.1
Sipha flava gca003268045v1 Yellow sugarcane aphid YSA_version1
Sitophilus oryzae gca002938485v2rs Rice weevil Soryzae_2.0
Solanum lycopersicum tomato SL3.0
Solanum tuberosum potato SolTub_3.0
Sorex araneus European shrew sorAra1
Sorghum bicolor sorghum Sorghum_bicolor_NCBIv3
Sparus aurata gilthead seabream fSpaAur1.1
Spermophilus dauricus Daurian ground squirrel ASM240643v1
Sphaeramia orbicularis orbiculate cardinalfish fSphaOr1.1
Sphenodon punctatus tuatara ASM311381v1
Sporisorium reilianum ASM23024v1
Stachyris ruficeps rufous-capped babbler ASM869450v1
Stegastes partitus bicolor damselfish Stegastes_partitus-1.0.2
Stegodyphus dumicola gca010614865v2rs Social spider ASM1061486v2
Stegodyphus mimosarum African social velvet spider Stegodyphus_mimosarum_v1
Stomoxys calcitrans Stable fly ScalU1
Strigamia maritima Soil centipede Smar1
Strigops habroptila Kakapo bStrHab1_v1.p
Strix occidentalis caurina northern spotted owl Soccid_v01
Strongylocentrotus purpuratus Purple sea urchin Spur_5.0
Struthio camelus australis African ostrich ASM69896v1
Stylophora pistillata gca002571385v1 Hood coral Stylophora_pistillata_v1
Suricata suricatta meerkat meerkat_22Aug2017_6uvM2_HiC
Sus scrofa pig Sscrofa11.1
Taeniopygia guttata zebra finch bTaeGut1_v1.p
Takifugu rubripes fugu fTakRub1.2
Terrapene carolina triunguis Three-toed box turtle T_m_triunguis-2.0
Tetrahymena thermophila JCVI-TTA1-2.2
Tetranychus urticae Two-spotted spider mite ASM23943v1
Tetraodon nigroviridis spotted green pufferfish TETRAODON 8.0
Thalassiosira pseudonana ASM14940v2
Thelohanellus kitauei Myxozoan endoparasite ASM82789v1
Theropithecus gelada gelada Tgel_1.0
Thrips palmi gca012932325v1rs Melon Thrips TpBJ_2018v1
Tigriopus californicus gca007210705 Copepod Tcal_SD_v2.1
Toxoplasma gondii TGA4
Trialeurodes vaporariorum gca011764245 Greenhouse whitefly ASM1176424v1
Tribolium castaneum Red flour beetle Tcas5.2
Trichinella spiralis Pork worm Tspiralis1
Trichoderma reesei v2.0
Trichoderma virens Trichoderma virens ASM17099v1
Trichogramma pretiosum gca000599845v3 Parasitoid wasp Tpre_2.0
Trichoplax adhaerens Placozoa ASM15027v1
Trifolium pratense purple clover Trpr
Triticum aestivum arinalrfor bread wheat PGSBv2.0_Arinalrfor
Triticum dicoccoides wild emmer wheat WEWSeq v.1.0
Triticum spelta PGSBv2.0_Spelta
Triticum turgidum durum wheat svevo
Triticum urartu red wild einkorn wheat Tu2.0
Trypanosoma brucei TryBru_Apr2005_chr11
Tuber melanosporum Perigord truffle ASM15164v1
Tupaia belangeri northern tree shrew tupBel1
Tursiops truncatus bottlenosed dolphin turTru1
Urocitellus parryii Arctic ground squirrel ASM342692v1
Ursus americanus American black bear ASM334442v1
Ursus maritimus Polar bear UrsMar_1.0
Ursus thibetanus thibetanus Asiatic black bear ASM966005v1
Ustilago maydis Umaydis521_2.0
Varanus komodoensis Komodo dragon ASM479886v1
Varroa destructor gca002443255 Honeybee mite Vdes_3.0
Varroa jacobsoni gca002532875v1rs Varroa mite vjacob_1.0
Venturia canescens gca019457755v1rs Endoparasitoid wasp ASM1945775v1
Verticillium dahliae ASM15067v2
Verticillium dahliaejr2 Verticillium dahliae JR2 VDAG_JR2v.4.0
Vicugna pacos alpaca vicPac1
Vigna angularis adzuki bean Vigan1.1
Vigna radiata mung bean Vradiata_ver6
Vigna unguiculata cowpea ASM411807v1
Vitis vinifera wine grape PN40024.v4
Vombatus ursinus common wombat bare-nosed_wombat_genome_assembly
Vulpes vulpes red fox VulVul2.2
Xenopus tropicalis tropical clawed frog UCB_Xtro_10.0
Xiphophorus couchianus Monterrey platyfish Xiphophorus_couchianus-4.0.1
Xiphophorus maculatus southern platyfish X_maculatus-5.0-male
Yarrowia lipolytica ASM252v1
Zalophus californianus california sea lion mZalCal1.pri
Zea mays maize Zm-B73-REFERENCE-NAM-5.0
Zerene cesonia gca012273895v2rs Southern Dogface Zerene_cesonia_1.1
Zonotrichia albicollis white-throated sparrow Zonotrichia_albicollis-1.0.1
Zootermopsis nevadensis Nevada dampwood termite ZooNev1.0
Zosterops lateralis melanops silver-eye ASM128173v1
Zymoseptoria tritici MG2

About genomic mapping

RNAcentral imports genome locations from Ensembl, LNCipedia, miRBase, and other Expert Databases. In addition, sequences are mapped to the reference genomes downloaded from Ensembl and Ensembl Genomes using blat.

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The genomic coordinates of the RNAcentral entries can be downloaded in BED format from the FTP site or through the REST API.

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