Genomic mapping

Species with genomic mapping

Genomic mapping is available for the following 622 species:

Species Assembly
Aedes aegypti lvpagwg yellow fever mosquito AaegL5
Anopheles albimanus AalbS2
Arabis alpina A_alpina_V4
Anopheles arabiensis AaraD1
Anopheles atroparvus AatrE3
Accipiter nisus Eurasian sparrowhawk Accipiter_nisus_ver1.0
Anopheles christyi AchrA1
Anopheles culicifacies AculA1
Anopheles dirus AdirW1
Anopheles epiroticus AepiE1
Aegilops tauschii Tausch's goatgrass Aet v4.0
Anopheles farauti AfarF2
Anopheles funestus African malaria mosquito AfunF3
Anopheles gambiae African malaria mosquito AgamP4
Arabidopsis halleri Ahal2.2
Pavo cristatus Indian peafowl AIIM_Pcri_1.0
Prunus dulcis ALMONDv2
Anopheles maculatus AmacM1
Apis mellifera honey bee Amel_HAv3.1
Anopheles merus AmerM2
Amphiprion ocellaris clown anemonefish AmpOce1.0
Adineta vaga AMS_PRJEB1171_v1
Amborella trichopoda Amborella AMTR1.0
Anolis carolinensis green anole AnoCar2.0v2
Agrilus planipennis gca000699045v2 Emerald ash borer Apla_2.0
Aplysia californica gca000002075v2 California sea hare AplCal3.0
Apteryx haastii Great spotted kiwi aptHaa1
Apteryx owenii little spotted kiwi aptOwe1
Apteryx rowi Okarito brown kiwi aptRow1
Anopheles quadriannulatus AquaS1
Athalia rosae gca000344095v2 Coleseed sawfly Aros_2.0
Bos taurus cattle ARS-UCD1.2
Bemisia tabaci asiaii5 ASIAII5_n227_616Mb
Anopheles sinensis china AsinC2
Aspergillus nidulans ASM1142v1
Lucilia cuprina ASM118794v1
Zosterops lateralis melanops silver-eye ASM128173v1
Scophthalmus maximus turbot ASM1334776v1
Phytophthora infestans potato late blight agent ASM14294v1
Calidris pugnax ruff ASM143184v1
Phaeosphaeria nodorum ASM14691v1
Sclerotinia sclerotiorum ASM14694v1
Thalassiosira pseudonana ASM14940v2
Fusarium verticillioides ASM14955v1
Aspergillus terreus ASM14961v1
Neosartorya fischeri ASM14964v1
Phytophthora ramorum Sudden oak death agent ASM14973v1
Puccinia graminis ASM14992v1
Pyrenophora triticirepentis ASM14998v1
Aspergillus fumigatusa1163 ASM15014v1
Trichoplax adhaerens ASM15027v1
Verticillium dahliae ASM15067v2
Phaeodactylum tricornutum Phaeodactylum tricornutum ASM15095v2
Puccinia triticina ASM15152v1
Tuber melanosporum Perigord truffle ASM15164v1
Daucus carota carrots ASM162521v1
Kryptolebias marmoratus mangrove rivulus ASM164957v1
Paramecium tetraurelia ASM16542v1
Beauveria bassiana ASM168263v1
Chenopodium quinoa ASM168347v1
Rhinopithecus bieti Black snub-nosed monkey ASM169854v1
Mola mola ocean sunfish ASM169857v1
Trichoderma virens Trichoderma virens ASM17099v1
Manacus vitellinus golden-collared manakin ASM171598v2
Orchesella cincta ASM171814v1
Aspergillus oryzae ASM18445v3
Ailuropoda melanoleuca giant panda ASM200744v2
Nematostella vectensis starlet sea anemone ASM20922v1
Acanthochromis polyacanthus spiny chromis ASM210954v1
Malus domestica golden ASM211411v1
Folsomia candida ASM221717v1
Anas zonorhyncha Eastern spot-billed duck ASM222487v1
Oryzias latipes Japanese medaka HdrR ASM223467v1
Delphinapterus leucas beluga whale ASM228892v3
Monodelphis domestica gray short-tailed opossum ASM229v1
Leptosphaeria maculans ASM23037v1
Tetranychus urticae two-spotted spider mite ASM23943v1
Spermophilus dauricus Daurian ground squirrel ASM240643v1
Plasmodium vivax ASM241v2
Anser brachyrhynchus pink-footed goose ASM259213v1
Aspergillus fumigatus ASM265v1
Aspergillus clavatus ASM271v1
Leishmania major ASM272v2
Plasmodium falciparum ASM276v2
Piliocolobus tephrosceles Ugandan red Colobus ASM277652v2
Physeter catodon sperm whale ASM283717v2
Aspergillus niger ASM285v2
Gopherus agassizii Agassiz's desert tortoise ASM289641v1
Schizosaccharomyces pombe ASM294v2
Equus asinus asinus donkey ASM303372v1
Gambusia affinis western mosquitofish ASM309773v1
Sphenodon punctatus tuatara ASM311381v1
Canis lupus dingo dingo ASM325472v1
Hucho hucho huchen ASM331708v1
Ursus americanus American black bear ASM334442v1
Carassius auratus goldfish ASM336829v1
Galdieria sulphuraria red algae ASM34128v1
Urocitellus parryii Arctic ground squirrel ASM342692v1
Chondrus crispus Irish moss ASM35022v2
Papaver somniferum ASM357369v1
Ipomoea triloba ASM357664v1
Chelonoidis abingdonii Abingdon island giant tortoise ASM359739v1
Calidris pygmaea Spoon-billed sandpiper ASM369795v1
Junco hyemalis dark-eyed junco ASM382977v1
Amazona collaria yellow-billed parrot ASM394721v1
Cucumis sativus cucumbers ASM407v2
Vigna unguiculata cowpea ASM411807v1
Phasianus colchicus Ring-necked pheasant ASM414374v1
Oryza indica Indian rice ASM465v1
Varanus komodoensis Komodo dragon ASM479886v1
Onchocerca volvulus prjeb513 ASM49940v2
Capsicum annuum ASM51225v2
Oreochromis aureus blue tilapia ASM587006v1
Plasmodium knowlesi ASM635v1
Struthio camelus australis African ostrich ASM69896v1
Drosophila simulans ASM75419v3
Belgica antarctica ASM77530v1
Thelohanellus kitauei ASM82789v1
Botrytis cinerea ASM83294v1
Oryzias sinensis Chinese medaka ASM858656v1
Stachyris ruficeps rufous-capped babbler ASM869450v1
Anas platyrhynchos mallard ASM874695v1
Nymphaea colorata ASM883128v1
Ashbya gossypii ASM9102v1
Cryptococcus neoformans ASM9104v1
Cyanidioschyzon merolae haploid red algae ASM9120v1
Ostreococcus lucimarinus green algae ASM9206v1
Ursus thibetanus thibetanus Asiatic black bear ASM966005v1
Leptobrachium leishanense Leishan spiny toad ASM966780v1
Eragrostis tef ASM97063v1
Asparagus officinalis Aspof.V1
Haplochromis burtoni Burton's mouthbrooder AstBur1.0
Anopheles stephensi Asian malaria mosquito AsteS1
Brassica napus oilseed rape AST_PRJEB5043_v1
Astyanax mexicanus Mexican tetra Astyanax_mexicanus-2.0
Athene cunicularia burrowing owl athCun1
Atta cephalotes leaf-cutter ant Attacep1.0
Coffea canephora AUK_PRJEB4211_v1
Labrus bergylta ballan wrasse BallGen_V1
Aquila chrysaetos chrysaetos golden eagle bAquChr1.2
Vombatus ursinus common wombat bare-nosed_wombat_genome_assembly
Catharus ustulatus Swainson's thrush bCatUst1.pri
Corvus moneduloides New Caledonian crow bCorMon1.pri
Drosophila melanogaster fruit fly BDGP6.32
Gallus gallus chicken bGalGal1.mat.broiler.GRCg7b
Biomphalaria glabrata BglaB1
Bigelowiella natans Bigna1
Ixodes persulcatus gca013358835v1 Taiga tick BIME_Iper_1.3
Bison bison bison American bison Bison_UMD1.0
Brugia malayi prjna10729 Bmal-4.0
Melopsittacus undulatus budgerigar bMelUnd1.mat.Z
Brassica oleracea wild cabbage BOL
Bos mutus wild yak BosGru_v2.0
Brachypodium distachyon false brome Brachypodium_distachyon_v3.0
Branchiostoma lanceolatum amphioxus BraLan2
Brassica rapa field mustard Brapa_1.0
Gasterosteus aculeatus three-spined stickleback BROAD S1
Strigops habroptila Kakapo bStrHab1_v1.p
Taeniopygia guttata zebra finch bTaeGut1_v1.p
Bombus terrestris buff-tailed bumblebee Bter_1.0
Bubo bubo Eurasian eagle-owl BubBub1.0
Buteo japonicus eastern buzzard ButJap1.0
Cairina moschata domestica muscovy Duck (domestic type) CaiMos1.0
Callorhinchus milii elephant shark Callorhinchus_milii-6.1.3
Camarhynchus parvulus small tree finch Camarhynchus_parvulus_V1.1
Camelus dromedarius Arabian camel CamDro2
Colobus angolensis palliatus Angola colobus Cang.pa_1.0
Capitella teleta bristle worm Capitella teleta v1.0
Mus caroli Ryukyu mouse CAROLI_EIJ_v1.1
Catagonus wagneri Chacoan peccary CatWag_v2_BIUU_UCD
Cercocebus atys Sooty mangabey Caty_1.0
Anas platyrhynchos platyrhynchos common mallard CAU_duck1.0
Cavia aperea Brazilian guinea pig CavAp1.0
Cavia porcellus domestic guinea pig Cavpor3.0
Corylus avellana European hazelnut CavTom2PMs-1.0
Caenorhabditis briggsae prjna10731 CB4
Chara braunii Cbr_1.0
Caenorhabditis brenneri prjna20035 C_brenneri-6.0.1b
Corchorus capsularis jute CCACVL1_1.0
Castor canadensis American beaver C.can_genome_v1.0
Ceratitis capitata gca000347755v4 Mediterranean fruit fly Ccap_2.0
Corymbia citriodora lemon-scented gum Ccitriodora_v2_1
Cynara cardunculus CcrdV1
Cebus capucinus White-headed capuchin Cebus_imitator-1.0
Eragrostis curvula CERZOS_E.curvula1.0
Centruroides sculpturatus gca000671375v2 Bark scorpion Cexi_2.0
Cervus hanglu yarkandensis Yarkand deer CEY_v1
Copidosoma floridanum gca000648655v2 Parasitoid wasp Cflo_2.0
Colletotrichum graminicola C_graminicola_M1_001_V1
Chelydra serpentina Common snapping turtle Chelydra_serpentina-1.0
Chinchilla lanigera Long-tailed chinchilla ChiLan1.0
Chlamydomonas reinhardtii chlamy Chlamydomonas_reinhardtii_v5.5
Chlorocebus sabaeus African green monkey ChlSab1.1
Choloepus hoffmanni Hoffmann's two-fingered sloth choHof1
Chrysemys picta bellii Western painted turtle Chrysemys_picta_bellii-3.0.3
Chrysolophus pictus golden pheasant Chrysolophus_pictus_GenomeV1.0
Clupea harengus Atlantic herring Ch_v2.0.2
Citrus clementina Citrus_clementina_v1.0
Caenorhabditis japonica prjna12591 C_japonica-7.0.1
Citrullus lanatus Cla97_v1
Cimex lectularius bed bug Clec_2.0
Cyprinus carpio common carp common_carp_genome
Sorex araneus European shrew sorAra1
Coturnix japonica Japanese quail Coturnix_japonica_2.0
Culex quinquefasciatus southern house mosquito CpipJ2
Caenorhabditis remanei prjna53967 C_remanei-15.0.1
Cricetulus griseus crigri Chinese hamster CriGri_1.0
Crocodylus porosus Australian saltwater crocodile CroPor_comp1
Camelina sativa Cs
Ciona savignyi Sea squirt Ciona savignyi CSAV 2.0
Cynoglossus semilaevis tongue sole Cse_v1.0
Bactrocera tryoni gca016617805v2 Queensland fruitfly CSIRO_BtryS06_freeze1
Culicoides sonorensis Cson1
Cyprinodon variegatus sheepshead minnow C_variegatus-1.0
Capra hircus blackbengal Goat CVASU_BBG_1.0
Crassostrea virginica gca002022765v4 Eastern oyster C_virginica_3.0
Cyanistes caeruleus blue tit cyaCae2
Cyprinus carpio carpio common carp Cypcar_WagV4.0
Drosophila ananassae dana_caf1
Daphnia magna daphmag2.4
Dasypus novemcinctus nine-banded armadillo Dasnov3.0
Dendroctonus ponderosae gca000355655v1 Mountain pine beetle DendPond_male_1.0
Dendronephthya gigantea gca004324835v1 Carnation coral DenGig_1.0
Drosophila erecta dere_caf1
Drosophila grimshawi dgri_caf1
Dictyostelium discoideum dicty_2.7
Dicentrarchus labrax European seabass dlabrax2021
Drosophila mojavensis dmoj_caf1
Fukomys damarensis Damara mole rat DMR_v1.0
Diuraphis noxia gca001186385v1 Russian wheat aphid Dnoxia_1.0
Dipodomys ordii Ord's kangaroo rat Dord_2.0
Drosophila persimilis dper_caf1
Drosophila pseudoobscura Dpse_3.0
Dromaius novaehollandiae emu droNov1
Drosophila sechellia dsec_caf1
Drosophila virilis dvir_caf1
Diabrotica virgifera gca003013835v2 Western corn rootworm Dvir_v2.0
Drosophila willistoni dwil_caf1
Drosophila yakuba dyak_caf1
Pseudonaja textilis eastern brown snake EBS10Xv2-PRI
Eptatretus burgeri Inshore hagfish Eburgeri_3.2
Echinochloa crusgalli monocots ec_v3
Electrophorus electricus electric eel Ee_SOAP_WITH_SSPACE
Fusarium culmorum Fusarium culmorum UK99 EF 1
Blumeria graminis EF2
Eucalyptus grandis Egrandis1_0
Esox lucius northern pike Eluc_v4
Emiliania huxleyi Emiliana huxleyi CCMP1516 main genome assembly v1.0
Albugo laibachii ENA 1
Equus caballus horse EquCab3.0
Eutrema salsugineum Eutsalg1_0
Ananas comosus F153
Falco tinnunculus common kestrel FalTin1.0
Anabas testudineus climbing perch fAnaTes1.2
Astatotilapia calliptera eastern happy fAstCal1.2
Betta splendens Siamese fighting fish fBetSpl5.2
Cottoperca gobio channel bull blenny fCotGob3.1
Cyclopterus lumpus lumpfish fCycLum1.pri
Denticeps clupeoides denticle herring fDenClu1.1
Echeneis naucrates live sharksucker fEcheNa1.1
Felis catus domestic cat Felis_catus_9.0
Erpetoichthys calabaricus reedfish fErpCal1.1
Gouania willdenowi blunt-snouted clingfish fGouWil2.1
Ficedula albicollis Collared flycatcher FicAlb1.5
Mastacembelus armatus zig-zag eel fMasArm1.2
Myripristis murdjan pinecone soldierfish fMyrMur1.1
Fusarium oxysporum FO2
Digitaria exilis monocots Fonio_CM05836
Parambassis ranga Indian glassy fish fParRan2.1
Salarias fasciatus jewelled blenny fSalaFa1.1
Salmo trutta brown trout fSalTru1.1
Scleropages formosus Asian bonytongue fSclFor1.1
Sparus aurata gilthead seabream fSpaAur1.1
Sphaeramia orbicularis orbiculate cardinalfish fSphaOr1.1
Takifugu rubripes fugu fTakRub1.2
Fundulus heteroclitus mummichog Fundulus_heteroclitus-3.0.2
Gadus morhua Atlantic cod gadMor3.0
Gaeumannomyces graminis Gae_graminis_V2
Gigantopelta aegis gca016097555v1 Deep sea snail Gae_host_genome
Glossina austeni GausT1
Glossina brevipalpis GbreI1
Yarrowia lipolytica ASM252v1
Saccoglossus kowalevskii gca000003605v1 Acorn worm GCA000003605v1
Hydra vulgaris gca000004095v1 Swiftwater hydra GCA000004095v1
Schizosaccharomyces cryophilus SCY4
Komagataella pastoris ASM2700v1
Schizosaccharomyces japonicus SJ5
Schizosaccharomyces octosporus SO6
Pyrenophora teres PyrTer_1.0
Microbotryum violaceum M_violaceum_V1
Trichoderma reesei v2.0
Melampsora laricipopulina v1.0
Sporisorium reilianum ASM23024v1
Fusarium pseudograminearum FP7
Colletotrichum higginsianum ASM31379v2
Colletotrichum gloeosporioides Colletotrichum gloeosporioides Nara gc-5
Dothistroma septosporum Dothistroma septosporum NZE10 v1.0
Colletotrichum orbiculare Corbiculare240422v01
Bactrocera dorsalis gca000789215v2 Oriental fruit fly GCA000789215v2
Bactrocera latifrons gca001853355v1 Solanum fruit fly GCA001853355v1
Dermatophagoides pteronyssinus gca001901225v2 European house dust mite GCA001901225v2
Pomacea canaliculata gca003073045v1 Apple snail GCA003073045v1
Rhopalosiphum maidis gca003676215v3 Corn leaf aphid GCA003676215v3
Pocillopora damicornis gca003704095v1 Cauliflower coral GCA003704095v1
Anneissia japonica gca011630105v1 Sea lily GCA011630105v1
Trialeurodes vaporariorum gca011764245 greenhouse whitefly GCA011764245v1
Hyalomma asiaticum gca013339685v1 ticks GCA013339685v1
Rhipicephalus sanguineus gca013339695v1 Brown dog tick GCA013339695v1
Rhipicephalus microplus gca013339725v1 Southern cattle tick GCA013339725v1
Dermacentor silvarum gca013339745v1 Ticks GCA013339745v1
Haemaphysalis longicornis gca013339765v1 Longhorned tick GCA013339765v1
Monomorium pharaonis gca013373865v2 Pharaoh ant GCA013373865v2
Aphidius gifuensis gca014905175v1 Parasitoid wasp GCA014905175v1
Clytia hemisphaerica gca902728285 GCA902728285v1
Triticum turgidum durum wheat svevo
Hermetia illucens gca905115235v1 Black soldier fly GCA905115235v1
Geospiza fortis medium ground-finch GeoFor_1.0
Giardia lamblia GL2
Glycine max soybeans Glycine_max_v2.1
Glossina morsitans GmorY1
Anser cygnoides swan goose GooseV1.0
Gorilla gorilla Western Lowland Gorilla gorGor4
Erythrura gouldiae Gouldian finch GouldianFinch
Glossina pallidipes GpalI1
Glossina palpalis GpapI1
Gossypium raimondii Graimondii2_0_v6
Homo sapiens human GRCh38.p13
Mus musculus mouse GRCm39
Danio rerio zebrafish GRCz11
Guillardia theta Guith1
Poecilia reticulata guppy Guppy_female_1.0_MT
Helianthus annuus common sunflower HanXRQr2.0-SUNRISE
Hippocampus comes tiger tail seahorse H_comes_QL1_v1
Erinaceus europaeus western European hedgehog eriEur1
Helobdella robusta freshwater leech Helro1
Heterocephalus glaber male naked mole-rat HetGla_1.0
Salvator merianae Argentine black and white tegu HLtupMer3
Heliconius melpomene postman butterfly Hmel1
Hofstenia miamia HmiaM1
Peromyscus maniculatus bairdii Northern American deer mouse HU_Pman_2.1
Hyaloperonospora arabidopsidis HyaAraEmoy2_2.0
Ictalurus punctatus channel catfish IpCoco_1.2
Oryza sativa Japanese rice IRGSP-1.0
Ixodes scapularis black-legged tick IscaW1
Jaculus jaculus Lesser Egyptian jerboa JacJac1.0
Aspergillus flavus JCVI-afl1-v2.0
Entamoeba histolytica JCVI-ESG2-1.0
Tetrahymena thermophila JCVI-TTA1-2.2
Kalanchoe fedtschenkoi K_fedtschenkoi_M2_v1
Ciona intestinalis Sea squirt Ciona intestinalis KH
Latimeria chalumnae coelacanth LatCha1
Laticauda laticaudata blue-ringed sea krait latLat_1.0
Larimichthys crocea large yellow croaker L_crocea_2.0
Leptinotarsa decemlineata gca000500325v2 Colorado potato beetle Ldec_2.0
Leptotrombidium deliense LdelU1
Lepidothrix coronata blue-crowned manakin Lepidothrix_coronata-1.0
Lepisosteus oculatus Spotted gar LepOcu1
Limulus polyphemus gca000517525v1 Atlantic horseshoe crab Limulus_polyphemus_2.1.2
Lingula anatina LinAna1.0
Lutzomyia longipalpis LlonJ1
Loa loa eye worm Loa_loa_V3
Lonchura striata domestica Bengalese finch LonStrDom1
Lottia gigantea owl limpet Lotgi1
Loxodonta africana African savanna elephant Loxafr3.0
Leersia perrieri Leersia Lperr_V1.4
Lepeophtheirus salmonis Salmon louse LSalAtl2s
Lactuca sativa eudicots Lsat_Salinas_v7
Bos grunniens domestic yak LU_Bosgru_v3.0
Lupinus angustifolius blue lupin LupAngTanjil_v1.0
Lytechinus variegatus gca018143015v1 Green sea urchin Lvar_3.0
Macaca fascicularis Crab-eating macaque Macaca_fascicularis_6.0
Magnaporthe poae Mag_poae_ATCC_64411_V1
Monopterus albus swamp eel M_albus_1.0
Manihot esculenta cassava Manihot esculenta v6
Marchantia polymorpha Marchanta_polymorpha_v1
Marmota marmota marmota Alpine marmot marMar2.1
Balaenoptera musculus Blue whale mBalMus1.v2
Callithrix jacchus white-tufted-ear marmoset mCalJac1.pat.X
Malurus cyaneus samueli superb fairywren mCya_1.0
Mayetiola destructor Hessian fly Mdes_1.0
Musca domestica house fly MdomA1
Medicago truncatula barrel medic MedtrA17_4.0
Suricata suricatta meerkat meerkat_22Aug2017_6uvM2_HiC
Melitaea cinxia Glanville fritillary MelCinx1.0
Cucumis melo Melonv4
Mesocricetus auratus Golden Hamster MesAur1.0
Notamacropus eugenii tammar wallaby Meug_1.0
Zymoseptoria tritici MG2
Magnaporthe oryzae MG8
Microtus ochrogaster vole MicOch1.0
Amphilophus citrinellus Midas cichlid Midas_v5
Mandrillus leucophaeus Drill Mleu.le_1.0
Lynx canadensis Canada lynx mLynCan4_v1.p
Macaca mulatta Macaque Mmul_10
Microcebus murinus gray mouse lemur Mmur_3.0
Mnemiopsis leidyi warty comb jelly MneLei_Aug2011
Macaca nemestrina Pig-tailed macaque Mnem_1.0
Metaseiulus occidentalis gca000255335v1 Western predatory mite Mocc_1.0
Hordeum vulgare domesticated barley MorexV3_pseudomolecules_assembly
Ornithorhynchus anatinus platypus mOrnAna1.p.v1
Moschus moschiferus Siberian musk deer MosMos_v2_BIUU_UCD
Phytophthora lateralis MPF4_v1.0
Phocoena sinus vaquita mPhoSin1.pri
Cotesia glomerata gca020080835v1 White butterfly parasite wasp MPM_Cglom_v2.3
Rattus norvegicus Norway rat mRatBN7.2
Rhinolophus ferrumequinum greater horseshoe bat mRhiFer1_v1.p
Sarcophilus harrisii Tasmanian devil mSarHar1.11
Megaselia scalaris Msca1
Sciurus vulgaris Eurasian red squirrel mSciVul1.1
Meriones unguiculatus Mongolian gerbil MunDraft-v1.0
Musa acuminata wild Malaysian banana Musa_acuminata_v2
Mus spicilegus steppe mouse MUSP714
Mustela putorius furo Domestic ferret MusPutFur1.0
Myotis lucifugus little brown bat Myoluc2.0
Zalophus californianus california sea lion mZalCal1.pri
Maylandia zebra zebra mbuna M_zebra_UMD2a
Naja naja Indian cobra Nana_v5
Neurospora crassa NC12
Amphiprion percula orange clownfish Nemo_v1
Neolamprologus brichardi lyretail cichlid NeoBri1.0
Nothobranchius furzeri turquoise killifish Nfu_20140520
Monodon monoceros narwhal NGI_Narwhal_1
Nicotiana attenuata coyote tobacco NIATTr2
Nomascus leucogenys Northern white-cheeked gibbon Nleu_3.0
Neovison vison American mink NNQGG.v01
Nothoprocta perdicaria Chilean tinamou notPer1
Penaeus monodon gca015228065v1 Black tiger shrimp NSTDA_Pmon_1
Numida meleagris helmeted guineafowl NumMel1.0
Nasonia vitripennis jewel wasp Nvit_psr_1.1
Orussus abietinus gca000612105v2 Parasitic wood wasp Oabi_2.0
Ovis aries sheep Oar_v3.1
Oryza barthii African wild rice O.barthii_v1
Ooceraea biroi gca003672135v1 Clonal raider ant Obir_v5.4
Ochotona princeps American pika OchPri2.0-Ens
Octodon degus Degu OctDeg1.0
Olea europaea sylvestris olive O_europaea_v1
Orbicella faveolata gca002042975v1 Mountainous star coral ofav_dov_v1
Oryzias javanicus javanese ricefish OJAV_1.1
Oncorhynchus kisutch coho salmon Okis_V2
Olea europaea olive OLEA9
Oryza longistaminata long-staminate rice O_longistaminata_v1.0
Oryzias melastigma Indian medaka Om_v0.7.RACA
Oreochromis niloticus Nile tilapia O_niloticus_UMD_NMBU
Oryza rufipogon common wild rice OR_W1943
Oryctolagus cuniculus rabbit OryCun2.0
Oryza brachyantha malo sina Oryza_brachyantha.v1.4b
Oryza glaberrima African rice Oryza_glaberrima_V1
Oryza glumipatula South American wild rice Oryza_glumaepatula_v1.5
Oryza meridionalis Australian wild rice Oryza_meridionalis_v1.3
Oryza nivara weedy rice Oryza_nivara_v1.0
Oryza punctata red rice Oryza_punctata_v1.2
Onthophagus taurus gca000648695v2 Dung beetle Otau_2.0
Otolemur garnettii small-eared galago OtoGar3
Oncorhynchus tshawytscha Chinook salmon Otsh_v1.0
Otus sunia Oriental scops-owl OtuSun1.0
Pythium aphanidermatum pag1_scaffolds_v1
Mus pahari Shrew mouse PAHARI_EIJ_v1.1
Panthera leo lion PanLeo1.0
Pan paniscus bonobo panpan1.1
Panthera pardus leopard PanPar1.0
Panthera tigris altaica Tiger PanTig1.0
Pan troglodytes chimpanzee Pan_tro_3.0
Papio anubis olive baboon Panubis1.0
Pythium arrhenomanes par_scaffolds_v1
Parus major Great Tit Parus_major1.1
Prunus avium PAV_r1.0
Plasmodium berghei PBANKA01
Plasmodium chabaudi PCHAS01
Propithecus coquereli Coquerel's sifaka Pcoq_1.0
Pelodiscus sinensis Chinese softshell turtle PelSin_1.0
Pelusios castaneus West African mud turtle Pelusios_castaneus-1.0
Phascolarctos cinereus koala phaCin_unsw_v4.1
Panicum hallii Panicgrass PhalliiHAL_v2.1
Panicum hallii fil2 Panicgrass PHallii_v3.1
Phaseolus vulgaris French bean PhaVulg1_0
Pediculus humanus PhumU2
Phytophthora kernoviae PhyKer238/432v1
Physcomitrium patens moss Phypa V3
Phytophthora parasitica Phyt_para_P1569_V1
Pythium irregulare pir_scaffolds_v1
Pistacia vera PisVer_v2
Pythium iwayamai piw_scaffolds_v1
Paramormyrops kingsleyae Paramormyrops kingsleyae PKINGS_0.1
Poecilia latipinna sailfin molly P_latipinna-1.0
Petromyzon marinus sea lamprey Pmarinus_7.0
Poecilia mexicana shortfin molly P_mexicana-1.0
Periophthalmus magnuspinnatus Periophthalmus magnuspinnatus PM.fa
Vitis vinifera wine grape PN40024.v4
Podarcis muralis common wall lizard PodMur_1.0
Poecilia formosa Amazon molly Poecilia_formosa-5.1.2
Populus trichocarpa poplar Pop_tri_v3
Phlebotomus papatasi PpapI1
Priapulus caudatus gca000485595v2 Penis worm Priapulus_caudatus-5.0.1
Octopus bimaculoides California two-spot octopus PRJNA270931
Procavia capensis cape rock hyrax proCap1
Prolemur simus greater bamboo lemur Prosim_1.0
Prunus persica peach Prunus_persica_NCBIv2
Phytophthora sojae P.sojae V3.0
Puccinia striiformis PST-130_1.0
Parasteatoda tepidariorum gca000365465v3 Common house spider Ptep_3.0
Pteropus vampyrus large flying fox pteVam1
Pundamilia nyererei Makobe Island cichlid PunNye1.0
Pythium vexans pve_scaffolds_v1
Pogona vitticeps central bearded dragon pvi1.1
Arabidopsis thaliana thale-cress TAIR10
Aedes albopictus Asian tiger mosquito AaloF1
Anopheles coluzzii AcolM1
Anopheles darlingi AdarC3
Anopheles melas AmelC2
Anopheles minimus AminM1
Aotus nancymaae Ma's night monkey Anan_2.0
Amphimedon queenslandica Aqu1
Lates calcarifer barramundi perch ASB_HGAPassembly_v1
Pygocentrus nattereri red-bellied piranha Pygocentrus_nattereri-1.0.2
Saccharomyces cerevisiae baker's yeast R64-1-1
Rosa chinensis RchiOBHm-V2
Actinidia chinensis Red5_PS1_1.69.0
Beta vulgaris sugar beet RefBeet-1.2.2
Neogobius melanostomus round goby RGoby_Basel_V2
Gopherus evgoodei Goodes thornscrub tortoise rGopEvg1_v1.p
Rhagoletis pomonella gca013731165v1 Apple magot fly Rhpom_1.0
Canis lupus familiaris dog ROS_Cfam_1.0
Rhodnius prolixus RproC3
Rhinopithecus roxellana Golden snub-nosed monkey Rrox_v1
Saimiri boliviensis boliviensis Bolivian squirrel monkey SaiBol1.0
Sinocyclocheilus grahami golden-line barbel SAMN03320097.WGS_v1.1
Sinocyclocheilus rhinocerous horned golden-line barbel SAMN03320098_v1.1
Sinocyclocheilus anshuiensis blind barbel SAMN03320099.WGS_v1.1
Serinus canaria common canary SCA1
Stomoxys calcitrans stable fly ScalU1
Seriola dumerili greater amberjack Sdu_1.0
Seriola lalandi dorsalis yellowtail amberjack Sedor1
Setaria italica foxtail millet Setaria_italica_v2.0
Setaria viridis Setaria_viridis_v2.0
Nannospalax galili Upper Galilee mountains blind mole rat S.galili_v1.0
Sesamum indicum S_indicum_v1.0
Solanum lycopersicum tomato SL3.0
Sander lucioperca pike-perch SLUC_FBN_1
Strigamia maritima Smar1
Strix occidentalis caurina northern spotted owl Soccid_v01
Solanum tuberosum potato SolTub_3.0
Anoplophora glabripennis Agla_1.0
Bombyx mori silkworm ASM15162v1
Crassostrea gigas Pacific oyster oyster_v9
Schistosoma mansoni blood fluke ASM23792v2
Bombus impatiens BIMP_2.0
Pristionchus pacificus El_Paco
Aegilops tauschii Tausch's goatgrass ASM34733v1
Dendroctonus ponderosae mountain pine beetle DendPond_male_1.0
Brassica rapa field mustard IVFCAASv1
Danaus plexippus monarch butterfly Dpv3
Acyrthosiphon pisum pea aphid Acyr_2.0
Triticum urartu red wild einkorn wheat ASM34745v1
Vitis vinifera wine grape 12X
Glossina fuscipes GfusI1
Gallus gallus chicken GRCg6a
Salmo salar Atlantic salmon ICSASG_v2
Melopsittacus undulatus Budgie Melopsittacus_undulatus_6.3
Oncorhynchus mykiss rainbow trout Omyk_1.0
Dicentrarchus labrax European seabass seabass_V1.0
Solenopsis invicta red fire ant Si_gnH
Sarcoptes scabiei SscaA1
Camarhynchus parvulus small tree finch STF_HiC
Teleopsis dalmanni Tel_dalmanni_2A_v1.0
Corvus moneduloides New Caledonian crow UO_Cmon_1.0
Xenopus tropicalis tropical clawed frog Xenopus_tropicalis_v9.1
Sorghum bicolor sorghum Sorghum_bicolor_NCBIv3
Ictidomys tridecemlineatus thirteen-lined ground squirrel SpeTri2.0
Mus spretus algerian mouse SPRET_EiJ_v1
Strongylocentrotus purpuratus purple sea urchin Spur_5.0
Strongyloides ratti prjeb125 S_ratti_ED321_v5_0_4
Salmo salar Atlantic salmon Ssal_v3.1
Sus scrofa pig Sscrofa11.1
Saccharum spontaneum Sspon.HiC_chr_asm
Stegastes partitus bicolor damselfish Stegastes_partitus-1.0.2
Stegodyphus mimosarum Stegodyphus_mimosarum_v1
Stylophora pistillata gca002571385v1 Hood coral Stylophora_pistillata_v1
Pongo abelii Sumatran orangutan Susie_PABv2
Carlito syrichta Philippine tarsier Tarsius_syrichta-2.0.1
Tigriopus californicus gca007210705 Tcal_SD_v2.1
Tribolium castaneum red flour beetle Tcas5.2
Dioscorea rotundata TDr96_F1_v2_PseudoChromosome
Echinops telfairi small Madagascar hedgehog TENREC
Tetraodon nigroviridis spotted green pufferfish TETRAODON 8.0
Toxoplasma gondii TGA4
Theropithecus gelada gelada Tgel_1.0
Terrapene carolina triunguis Three-toed box turtle T_m_triunguis-2.0
Trichogramma pretiosum gca000599845v3 Parasitoid wasp Tpre_2.0
Tupaia belangeri northern tree shrew tupBel1
Trifolium pratense purple clover Trpr
Trypanosoma brucei TryBru_Apr2005_chr11
Notechis scutatus mainland tiger snake TS10Xv2-PRI
Trichinella spiralis pork worm Tspiralis1
Meleagris gallopavo turkey Turkey_5.1
Tursiops truncatus bottlenosed dolphin turTru1
Xenopus tropicalis tropical clawed frog UCB_Xtro_10.0
Ustilago maydis Umaydis521_2.0
Ficus carica common fig UNIPI_FiCari_1.0
Bos indicus hybrid hybrid cattle UOA_Brahman_1
Ursus maritimus Polar bear UrsMar_1.0
Oncorhynchus mykiss rainbow trout USDA_OmykA_1.1
Puccinia graminisug99 v1
Arabidopsis lyrata lyrate rockcress v.1.0
Selaginella moellendorffii spikemoss v1.0
Daphnia pulex common water flea V1.0
Fusarium solani v2.0
Quercus lobata ValleyOak3.0
Verticillium dahliaejr2 Verticillium dahliae JR2 VDAG_JR2v.4.0
Varroa destructor gca002443255 honeybee mite Vdes_3.0
Vicugna pacos alpaca vicPac1
Vigna angularis adzuki bean Vigan1.1
Vigna radiata mung bean Vradiata_ver6
Vulpes vulpes red fox VulVul2.2
Juglans regia English walnut Walnut_2.0
Caenorhabditis elegans C.elegans WBcel235
Triticum dicoccoides wild emmer wheat WEWSeq v.1.0
Xiphophorus couchianus Monterrey platyfish Xiphophorus_couchianus-4.0.1
Xiphophorus maculatus southern platyfish X_maculatus-5.0-male
Sipha flava gca003268045v1 Yellow sugarcane aphid YSA_version1
Zea mays maize Zm-B73-REFERENCE-NAM-5.0
Zonotrichia albicollis white-throated sparrow Zonotrichia_albicollis-1.0.1
Zootermopsis nevadensis Nevada dampwood termite ZooNev1.0

About genomic mapping

RNAcentral imports genome locations from Ensembl, LNCipedia, miRBase, and other Expert Databases. In addition, sequences are mapped to the reference genomes downloaded from Ensembl and Ensembl Genomes using blat.

Data access

RNAcentral sequences can be viewed in their genomic context using a light-weight genome browser powered by Genoverse. External links are provided to the fully-featured genome browsers such as Ensembl, Ensembl Genomes, and UCSC genome browser.

The genomic coordinates of the RNAcentral entries can be downloaded in BED format from the FTP site or through the REST API.


Improve this page