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Arabidopsis thaliana (thale cress) ath-miR396b-5p URS00001D441B_3702

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ath-miR396b-5p: Ath-mir396b-5p is a microRNA that potentially targets the defense-related gene NONHOST RESISTANCE1 (NHO1) [PMC8080638]. In a study analyzing the interaction networks, ath-mir396b-5p was found to have a higher degree, indicating its central position in the networks [PMC8080638]. Additionally, ath-mir396b-5p was found to have higher degrees in pairs where miRNA was down-regulated while mRNA was up-regulated [PMC8080638]. In another study evaluating the expression of miRNAs in susceptible and resistant biotypes of Echinochloa crus-galli, ath-mir396b-5p showed no over-expression after herbicide treatment and no differences in expression between susceptible and resistant biotypes [PMC9736381]. This suggests that ath-mir396b-5p may not be involved in herbicide resistance mechanisms in E. crus-galli [PMC9736381]. Overall, these findings highlight the potential role of ath-mir396b-5p in regulating defense-related genes and its involvement in interaction networks. However, further research is needed to fully understand its functional significance and potential implications.

Genome locations

Gene Ontology annotations

Sequence

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Taxonomic tree

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This sequence is found in 52 other species

  1. Aegilops tauschii ata-miR396c-5p
  2. Amborella trichopoda atr-miR396e
  3. Ananas comosus (pineapple) sbi-miR396c
  4. Aquilegia coerulea (Rocky Mountain columbine) aqc-miR396b
  5. Arabidopsis lyrata (lyrate rockcress) aly-miR396b-5p
  6. Avicennia marina ama-miR396-5p
  7. Brachypodium distachyon bdi-miR396e-5p
  8. Brassica napus bna-miR396a
  9. Brassica rapa bra-miR396-5p
  10. Bruguiera cylindrica bcy-miR396b
  11. Bruguiera gymnorhiza (Burma mangrove) bgy-miR396b
  12. Camelina sativa (false flax) cas-miR396b
  13. Citrus sinensis (sweet orange) csi-miR396f-5p
  14. Citrus x clementina (clementine) ccl-miR396
  15. Corchorus capsularis (jute) sRNA CCACVL1_27830
  16. Corchorus olitorius aau-miR3
  17. Cucumis melo (muskmelon) cme-miR396d
  18. Cynara cardunculus (wild artichoke) cca-miR396a-5p
  19. Fragaria vesca subsp. vesca fve-miR396b-5p
  20. Glycine max gma-miR396c
  21. Helianthus annuus ath-miR396b-5p
  22. Hypericum perforatum Hyp-miR396
  23. Linum usitatissimum lus-miR396e
  24. Malus domestica (apple) mdm-miR396d
  25. Manihot esculenta mes-miR396f
  26. Medicago truncatula mtr-miR396a-5p
  27. Nicotiana attenuata microRNA mir-396-like
  28. Nicotiana tabacum (common tobacco) nta-miR396b
  29. Oryza alta miR396c 5p
  30. Oryza australiensis miR396c 5p
  31. Oryza barthii miR396c 5p
  32. Oryza glaberrima miR396c 5p
  33. Oryza minuta miR396c 5p
  34. Oryza nivara miR396c 5p
  35. Oryza rufipogon miR396c 5p
  36. Oryza sativa (Asian cultivated rice) osa-miR396c-5p
  37. Oryza sativa Indica Group miR396c 5p
  38. Oryza sativa Japonica Group (Japanese rice) miR396c 5p
  39. Pachycladon cheesemanii Pch-miR396b
  40. Pachycladon fastigiatum Pfa-miR396b
  41. Picea abies pab-miR396h
  42. Pinus taeda pta-miR396
  43. Populus tomentosa Pto-miR396d
  44. Populus trichocarpa (black cottonwood) ptc-miR396d
  45. Prunus persica (peach) ppe-miR396b
  46. Ricinus communis rco-miR396
  47. Rosa chinensis ath-miR396b-5p
  48. Solanum lycopersicum (tomato) sly-miR396b
  49. Solanum tuberosum stu-miR396-5p
  50. Sorghum bicolor (sorghum) sbi-miR396c
  51. Theobroma cacao tcc-miR396e
  52. Zea mays (maize) zma-miR396f-5p
Publications