v24

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Capra hircus (goat) chi-miR-1 URS00001DC04F_9925

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chi-mir-1: Chi-mir-1 is a downregulated DEmiRNA that targets TMEM173, a major stimulator in IFN production, in PPRV-infected cells [PMC6048839]. It is also downregulated in mock-infected goat PBMC compared to PPRV-infected cells [PMC6048839]. Chi-mir-1 is highly expressed throughout the four sampled stages of the longissimus dorsi muscle of goats [PMC5087842]. It is one of the top 10 DEmiRNAs expressed in these stages [PMC8314457]. Chi-mir-1 is highly abundant and detected in 10.59% of all known miRNAs [PMC5087842]. It targets tumor necrosis factor receptor superfamily member TNFRSF9 genes [PMC6048839]. In addition, chi-mir-1 binds to lncRNA MSTRG.1705.1 and circRNA9106, acting as a sponge for multiple miRNAs [PMC9478897] [PMC8226234]. Chi-mir-1 and chi-mir-133a-3p are overexpressed in the goat endometrium on day 16 of pregnancy compared to nonpregnancy, potentially targeting different genes for various physiological roles with overlapping functions between them [PMC8004627]. Overall, chi-mir-1 plays a significant role in various biological processes and regulatory networks.

Genome locations

Gene Ontology annotations

Sequence

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UGGAAUGUAAAGAAGUAUGUAU

Taxonomic tree

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This sequence is found in 64 other species

  1. Alligator mississippiensis ami-miR-1a-3p
  2. Anolis carolinensis (green anole) aca-miR-1a-3p
  3. Bos taurus (cattle) bta-miR-1
  4. Branchiostoma belcheri bbe-miR-1-5p
  5. Branchiostoma floridae (Florida lancelet) bfl-miR-1-3p
  6. Branchiostoma lanceolatum Bla-Mir-1_3p (mature (guide))
  7. Callithrix jacchus (white-tufted-ear marmoset) cja-miR-1a
  8. Callorhinchus milii Cmi-Mir-1-P4_3p (mature (guide))
  9. Canis lupus familiaris Cfa-Mir-1-P1_3p (mature (guide))
  10. Cavia porcellus (domestic guinea pig) cpo-miR-1a-3p
  11. Chrysemys picta bellii (western painted turtle) Cpi-Mir-1-P1_3p (mature (guide))
  12. Chrysemys picta cpi-miR-1a-3p
  13. Columba livia cli-miR-1a-3p
  14. Crassostrea gigas (Pacific oyster) Cgi-Mir-1_3p (mature (guide))
  15. Cyprinus carpio ccr-miR-1
  16. Danio rerio dre-miR-1
  17. Dasypus novemcinctus dno-miR-1-3p
  18. Echinops telfairi Ete-Mir-1-P1_3p (mature (guide))
  19. Eptatretus burgeri Ebu-Mir-1-P7_3p (mature (guide))
  20. Eptesicus fuscus (big brown bat) efu-miR-1
  21. Equus caballus (horse) eca-miR-1
  22. Gadus morhua (Atlantic cod) gmo-miR-1-3p
  23. Gallus gallus Gga-Mir-1-P1_3p (mature (guide))
  24. Gekko japonicus Gja-Mir-1-P1_3p (mature (guide))
  25. Haplochromis burtoni (Burton's mouthbrooder) abu-miR-1
  26. Hippoglossus hippoglossus hhi-miR-1
  27. Homo sapiens (human) hsa-miR-1-3p
  28. Latimeria chalumnae Lch-Mir-1-P1_3p (mature (guide))
  29. Lepisosteus oculatus (spotted gar) Loc-Mir-1-P1_3p (mature (guide))
  30. Lottia gigantea (owl limpet) lgi-miR-1
  31. Lytechinus variegatus (green sea urchin) lva-miR-1-3p
  32. Macaca mulatta mml-miR-1-3p
  33. Maylandia zebra (zebra mbuna) mze-miR-1
  34. Melibe leonina mle-miR-1-3p
  35. Microcaecilia unicolor Mun-Mir-1-P1_3p (mature (guide))
  36. Monodelphis domestica (gray short-tailed opossum) mdo-miR-1-3p
  37. Monopterus albus (swamp eel) Mal-Mir-1-P1_3p (mature (guide))
  38. Mus musculus mmu-miR-1a-3p
  39. Nautilus pompilius Npo-Mir-1-P20_3p (mature (guide))
  40. Neolamprologus brichardi (lyretail cichlid) nbr-miR-1
  41. Ophiophagus hannah (king cobra) oha-miR-1b-3p
  42. Oreochromis niloticus (Nile tilapia) oni-miR-1
  43. Ornithorhynchus anatinus oan-miR-1a-3p
  44. Oryctolagus cuniculus (rabbit) ocu-miR-1-3p
  45. Pan troglodytes ptr-miR-1
  46. Paralichthys olivaceus (Japanese flounder) pol-miR-1-3p
  47. Patiria miniata (sea bat) pmi-miR-1-3p
  48. Petromyzon marinus (sea lamprey) Pma-Mir-1-o3_3p (mature (guide))
  49. Pongo pygmaeus ppy-miR-1
  50. Pteropus alecto (black flying fox) pal-miR-1-3p
  51. Pundamilia nyererei pny-miR-1
  52. Python bivittatus Pbv-Mir-1-P3_3p (mature (guide))
  53. Rattus norvegicus rno-miR-1b
  54. Salmo salar (Atlantic salmon) ssa-miR-1-3p
  55. Sarcophilus harrisii Sha-Mir-1-P1_3p (mature (guide))
  56. Scyliorhinus torazame Sto-Mir-1-P1_3p (mature (guide))
  57. Sphenodon punctatus Spt-Mir-1-P1_3p (mature (guide))
  58. Strongylocentrotus purpuratus spu-miR-1
  59. Taeniopygia guttata (zebra finch) tgu-miR-1-3p
  60. Takifugu rubripes fru-miR-1
  61. Tetraodon nigroviridis tni-miR-1
  62. Tor tambroides miR-1
  63. Xenopus laevis (African clawed frog) xla-miR-1a-3p
  64. Xenopus tropicalis (tropical clawed frog) Xtr-Mir-1-P1_3p (mature (guide))
 Publications