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Arabidopsis thaliana (thale cress) ath-miR167b URS000013A25F_3702

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ath-miR167a-5p: Ath-mir167a-5p is a precursor of a miRNA that is overexpressed in apomictic samples [PMC6567921]. Another member of the miR167 family, ccl-miR167a, showed a modest increase in expression [PMC6567921]. Ath-mir167a-5p targets five different DElncRNAs, while the lncRNA TCONS_00001191 is targeted by two miRNAs, ath-miR164a and ath-miR164c-5p [PMC9971629]. Ath-mir167a-5p, along with other miRNAs such as ath-miR167b and ath-miR5665, targets genes such as ARF6, ARF8, ARF5, ARF2, and ARF3 [PMC8151434]. Fifteen miRNAs related to seed germination were selected to validate their expression using qRT-PCR [PMC8151434]. The target genes of these 15 miRNAs were found to be related to plant hormones based on KEGG and GO analysis [PMC8151434]. The expression of ath-mir167a-5p and other miRNAs was found to be down-regulated in eno2-, while the expression of other miRNAs was up-regulated [PMC8151434]. MIR167a (ath-mir167a-5p precursor) was identified as the major functional precursor for MIR167 in vivo with a strong regulatory effect on ARF8 [PMC7769420]. Ath-mir167a-5p was identified as the main regulator of ARF8 based on reverse searching using "Reverse Digger" tool [PMC7769420].

Genome locations

Gene Ontology annotations

Sequence

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UGAAGCUGCCAGCAUGAUCUA

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This sequence is found in 35 other species

  1. Aegilops tauschii ata-miR167a-5p
  2. Ananas comosus (pineapple) microRNA 167g
  3. Arabidopsis lyrata (lyrate rockcress) aly-miR167a-5p
  4. Asparagus officinalis (garden asparagus) aof-miR167a
  5. Brachypodium distachyon bdi-miR167a
  6. Brassica napus (rape) bna-miR167c
  7. Brassica rapa bra-miR167d
  8. Carica papaya cpa-miR167b
  9. Citrus sinensis csi-miR167e-5p
  10. Corchorus capsularis (jute) sRNA CCACVL1_14458
  11. Corchorus olitorius ahy-miR167-
  12. Cucumis melo cme-miR167b
  13. Cynara cardunculus var. scolymus cca-miR167c
  14. Digitalis purpurea (common foxglove) dpr-miR167b
  15. Glycine max (soybean) gma-miR167b
  16. Gossypium hirsutum (cotton) ghr-miR167a
  17. Helianthus annuus (common sunflower) ath-miR167a-5p
  18. Linum usitatissimum lus-miR167e
  19. Malus domestica mdm-miR167b
  20. Manihot esculenta (cassava) mes-miR167c
  21. Medicago truncatula (barrel medic) mtr-miR167a
  22. Nicotiana tabacum (common tobacco) nta-miR167d
  23. Oryza sativa (Asian cultivated rice) osa-miR167b
  24. Oryza sativa Japonica Group (Japanese rice) microRNA osa-miR167b
  25. Populus tomentosa Pto-miR167d
  26. Populus trichocarpa ptc-miR167a
  27. Prunus persica (peach) ppe-miR167a
  28. Ricinus communis (castor bean) rco-miR167b
  29. Solanum lycopersicum sly-miR167a
  30. Solanum tuberosum (potato) stu-miR167a-5p
  31. Sorghum bicolor (sorghum) sbi-miR167a
  32. Theobroma cacao tcc-miR167a
  33. Triticum aestivum (bread wheat) tae-miR167a
  34. Vitis vinifera vvi-miR167b
  35. Zea mays (maize) zma-miR167c-5p
Publications