v24

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Homo sapiens (human) RNA, 5S ribosomal 1 (RNA5S1-8, RNA5S10-17) secondary structure diagram

Homo sapiens (human) RNA, 5S ribosomal 1 (RNA5S1-8, RNA5S10-17) URS00000F9D45_9606

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RNA5S5: The RNA5S5 gene, transcribed by RNA polymerase III (Pol III), is a representative 5S ribosomal RNA gene that is 121 nucleotides long [1]. It is encoded by rDNA RNA5S5 on Chromosome 1 in humans [2]. In studies, rRNA presence was determined by mapping reads to rRNA human sequences, including RNA28S5, RNA18S5, RNA5-8S5, and RNA5S57 [3]. GenBank sequences of rRNAs (45SN1, 16SN2, MT-RNR1) were used as reference sequences for analysis [1]. In gene expression analysis, the CCL2 gene showed the greatest decrease in expression, followed by CIC and several ribosomal RNA genes or pseudogenes, including RNA5S5 [4]. G4-L1 motifs were found in the promoter of the RNA-8SN gene and in genes such as RNA28SN2 [5]. The example gene used for UCSC genome browser display was RNA5S57 [6]. In another study on dysregulated peak-associated genes, Homo sapiens RNA was found to be dysregulated in LS group samples [7].

mRNA interactions 2 total

Genome locations

Gene Ontology annotations

Sequence

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GUCUACGGCCAUACCACCCUGAACGCGCCCGAUCUCGUCUGAUCUCGGAAGCUAAGCAGGGUCGGGCCUGGUUAGUACUUGGAUGGGAGACCGCCUGGGAAUACCGGGUGCUGUAGGCUUU

Taxonomic tree

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This sequence is found in 7 other species

  1. Mus musculus 5S ribosomal RNA from Mus musculus (PDB 7LS1, chain B2)
  2. Oryctolagus cuniculus 5S ribosomal RNA from Oryctolagus cuniculus (PDB 4D67, chain 4)
  3. Cavia porcellus 5S ribosomal RNA (LOC100379618)
  4. Macaca fascicularis 5S ribosomal RNA
  5. Mesocricetus auratus rRNA
  6. Rattus norvegicus RNA (121-MER) from Rattus norvegicus (PDB 7QGG, chain E)
  7. Tursiops truncatus 5S ribosomal RNA
 2D structure Publications