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Saccharomyces cerevisiae S288C Glutamate tRNA (tRNA-Glu), predicted by tRNAscan-SE analysis secondary structure diagram

Saccharomyces cerevisiae S288C Glutamate tRNA (tRNA-Glu), predicted by tRNAscan-SE analysis URS00000D4623_559292

Automated summary: This ncRNA sequence is 72 nucleotides long and is found in Saccharomyces cerevisiae S288C. Annotated by 4 databases (SGD, IntAct, ENA, Rfam). Described in 64 papers. Has a conserved secondary structure or a structured region. Matches 1 Rfam family (tRNA, RF00005). Saccharomyces cerevisiae S288C Glutamate tRNA (tRNA-Glu), predicted by tRNAscan-SE analysis sequence is a product of tRNA-Glu-TTC-1-6, tRNA-Glu-TTC-1-2, tRNA-Glu-TTC-1-10, tRNA-Glu-TTC-1-5, tRNA-Glu-TTC-1-7, tRNA-Glu-TTC-1-12, tRNA-Glu-TTC-1-1, SOE1, tRNA-Glu-TTC-1-13, tRNA-Glu-TTC-1-4, tRNA-Glu-TTC-1-8, tRNA-Glu-TTC-1-9, tRNA-Glu-TTC-1-11, tRNA-Glu-TTC-1-3 genes. Found in the Saccharomyces cerevisiae S288C reference genome.

Interactions 3

According to IntAct, Saccharomyces cerevisiae S288C Glutamate tRNA (tRNA-Glu), predicted by tRNAscan-SE analysis interacts with:

IntAct ID Participant Synonyms
EBI-11685995 P53072 D6VVA2 EBI-24190 P53072 TAN1 YGL232W tan1_yeast
EBI-12520649 Q02908 D6W3T1 EBI-33957 ELP3 Gamma-toxin target 3 HPA1 Q02908 TOT3 YPL086C elp3_yeast tRNA uridine(34) acetyltransferase
EBI-12520639 Q06706 D6VZ19 EBI-9068 ELP1 Gamma-toxin target 1 IKI3 L3502.7 O00036 Protein IKI3 Q06706 TOT1 YLR384C elp1_yeast

Genome locations

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    Gene Ontology annotations

    Sequence

    Sequence features are shown above as colored rectangles. Zoom in and click to view details, or Reset

    UCCGAUAUAGUGUAACGGCUAUCACAUCACGCUUUCACCGUGGAGACCGGGGUUCGACUCCCCGUAUCGGAG

    Taxonomic tree

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    This sequence is found in 132 other species

    1. [Candida] glabrata CBS 138 tRNA
    2. [Candida] glabrata tRNA
    3. Kazachstania africana CBS 2517 tRNA
    4. Kazachstania barnettii transfer RNA-Glu(TTC)
    5. Kazachstania saulgeensis tRNA
    6. Kluyveromyces dobzhanskii CBS 2104 tRNA-Glu
    7. Kluyveromyces lactis tRNA
    8. Kluyveromyces marxianus DMKU3-1042 tRNA
    9. Kluyveromyces marxianus tRNA-Glu
    10. Lachancea dasiensis tRNA
    11. Lachancea fermentati tRNA
    12. Lachancea lanzarotensis tRNA
    13. Lachancea meyersii CBS 8951 tRNA-Glu (TTC) cove score=62.99
    14. Lachancea mirantina tRNA
    15. Lachancea sp. CBS 6924 tRNA-Glu (TTC) cove score=62.99
    16. Naumovozyma castellii CBS 4309 tRNA
    17. Naumovozyma dairenensis CBS 421 tRNA
    18. Saccharomyces arboricola H-6 tRNA
    19. Saccharomyces cerevisiae AWRI796 tRNA
    20. Saccharomyces cerevisiae (baker's yeast) tRNA Glu 3
    21. Saccharomyces cerevisiae EC1118 tRNA-Glu
    22. Saccharomyces cerevisiae FostersB tRNA
    23. Saccharomyces cerevisiae FostersO tRNA
    24. Saccharomyces cerevisiae Kyokai no. 7 tRNA-Glu
    25. Saccharomyces cerevisiae Lalvin QA23 tRNA
    26. Saccharomyces cerevisiae P283 tRNA-Glu
    27. Saccharomyces cerevisiae P301 tRNA-Glu
    28. Saccharomyces cerevisiae PE-2 tRNA-Glu
    29. Saccharomyces cerevisiae R008 tRNA-Glu
    30. Saccharomyces cerevisiae R103 tRNA-Glu
    31. Saccharomyces cerevisiae RM11-1a tRNA-Glu
    32. Saccharomyces cerevisiae Vin13 tRNA
    33. Saccharomyces cerevisiae VL3 tRNA
    34. Saccharomyces cerevisiae YJM1078 tRNA-Glu
    35. Saccharomyces cerevisiae YJM1083 tRNA-Glu
    36. Saccharomyces cerevisiae YJM1129 tRNA-Glu
    37. Saccharomyces cerevisiae YJM1133 tRNA-Glu
    38. Saccharomyces cerevisiae YJM1190 tRNA-Glu
    39. Saccharomyces cerevisiae YJM1199 tRNA-Glu
    40. Saccharomyces cerevisiae YJM1202 tRNA-Glu
    41. Saccharomyces cerevisiae YJM1208 tRNA-Glu
    42. Saccharomyces cerevisiae YJM1242 tRNA-Glu
    43. Saccharomyces cerevisiae YJM1244 tRNA-Glu
    44. Saccharomyces cerevisiae YJM1248 tRNA-Glu
    45. Saccharomyces cerevisiae YJM1250 tRNA-Glu
    46. Saccharomyces cerevisiae YJM1252 tRNA-Glu
    47. Saccharomyces cerevisiae YJM1273 tRNA-Glu
    48. Saccharomyces cerevisiae YJM1304 tRNA-Glu
    49. Saccharomyces cerevisiae YJM1307 tRNA-Glu
    50. Saccharomyces cerevisiae YJM1311 tRNA-Glu
    51. Saccharomyces cerevisiae YJM1326 tRNA-Glu
    52. Saccharomyces cerevisiae YJM1332 tRNA-Glu
    53. Saccharomyces cerevisiae YJM1336 tRNA-Glu
    54. Saccharomyces cerevisiae YJM1338 tRNA-Glu
    55. Saccharomyces cerevisiae YJM1341 tRNA-Glu
    56. Saccharomyces cerevisiae YJM1342 tRNA-Glu
    57. Saccharomyces cerevisiae YJM1355 tRNA-Glu
    58. Saccharomyces cerevisiae YJM1356 tRNA-Glu
    59. Saccharomyces cerevisiae YJM1381 tRNA-Glu
    60. Saccharomyces cerevisiae YJM1383 tRNA-Glu
    61. Saccharomyces cerevisiae YJM1385 tRNA-Glu
    62. Saccharomyces cerevisiae YJM1386 tRNA-Glu
    63. Saccharomyces cerevisiae YJM1387 tRNA-Glu
    64. Saccharomyces cerevisiae YJM1388 tRNA-Glu
    65. Saccharomyces cerevisiae YJM1389 tRNA-Glu
    66. Saccharomyces cerevisiae YJM1399 tRNA-Glu
    67. Saccharomyces cerevisiae YJM1400 tRNA-Glu
    68. Saccharomyces cerevisiae YJM1401 tRNA-Glu
    69. Saccharomyces cerevisiae YJM1402 tRNA-Glu
    70. Saccharomyces cerevisiae YJM1415 tRNA-Glu
    71. Saccharomyces cerevisiae YJM1417 tRNA-Glu
    72. Saccharomyces cerevisiae YJM1418 tRNA-Glu
    73. Saccharomyces cerevisiae YJM1419 tRNA-Glu
    74. Saccharomyces cerevisiae YJM1433 tRNA-Glu
    75. Saccharomyces cerevisiae YJM1434 tRNA-Glu
    76. Saccharomyces cerevisiae YJM1439 tRNA-Glu
    77. Saccharomyces cerevisiae YJM1443 tRNA-Glu
    78. Saccharomyces cerevisiae YJM1444 tRNA-Glu
    79. Saccharomyces cerevisiae YJM1447 tRNA-Glu
    80. Saccharomyces cerevisiae YJM1450 tRNA-Glu
    81. Saccharomyces cerevisiae YJM1460 tRNA-Glu
    82. Saccharomyces cerevisiae YJM1463 tRNA-Glu
    83. Saccharomyces cerevisiae YJM1477 tRNA-Glu
    84. Saccharomyces cerevisiae YJM1478 tRNA-Glu
    85. Saccharomyces cerevisiae YJM1479 tRNA-Glu
    86. Saccharomyces cerevisiae YJM1526 tRNA-Glu
    87. Saccharomyces cerevisiae YJM1527 tRNA-Glu
    88. Saccharomyces cerevisiae YJM1549 tRNA-Glu
    89. Saccharomyces cerevisiae YJM1573 tRNA-Glu
    90. Saccharomyces cerevisiae YJM1574 tRNA-Glu
    91. Saccharomyces cerevisiae YJM1592 tRNA-Glu
    92. Saccharomyces cerevisiae YJM1615 tRNA-Glu
    93. Saccharomyces cerevisiae YJM189 tRNA-Glu
    94. Saccharomyces cerevisiae YJM193 tRNA-Glu
    95. Saccharomyces cerevisiae YJM195 tRNA-Glu
    96. Saccharomyces cerevisiae YJM244 tRNA-Glu
    97. Saccharomyces cerevisiae YJM248 tRNA-Glu
    98. Saccharomyces cerevisiae YJM270 tRNA-Glu
    99. Saccharomyces cerevisiae YJM271 tRNA-Glu
    100. Saccharomyces cerevisiae YJM320 tRNA-Glu
    101. Saccharomyces cerevisiae YJM326 tRNA-Glu
    102. Saccharomyces cerevisiae YJM428 tRNA-Glu
    103. Saccharomyces cerevisiae YJM450 tRNA-Glu
    104. Saccharomyces cerevisiae YJM451 tRNA-Glu
    105. Saccharomyces cerevisiae YJM453 tRNA-Glu
    106. Saccharomyces cerevisiae YJM456 tRNA-Glu
    107. Saccharomyces cerevisiae YJM470 tRNA-Glu
    108. Saccharomyces cerevisiae YJM541 tRNA-Glu
    109. Saccharomyces cerevisiae YJM554 tRNA-Glu
    110. Saccharomyces cerevisiae YJM555 tRNA-Glu
    111. Saccharomyces cerevisiae YJM627 tRNA-Glu
    112. Saccharomyces cerevisiae YJM681 tRNA-Glu
    113. Saccharomyces cerevisiae YJM682 tRNA-Glu
    114. Saccharomyces cerevisiae YJM683 tRNA-Glu
    115. Saccharomyces cerevisiae YJM689 tRNA-Glu
    116. Saccharomyces cerevisiae YJM693 tRNA-Glu
    117. Saccharomyces cerevisiae YJM969 tRNA-Glu
    118. Saccharomyces cerevisiae YJM972 tRNA-Glu
    119. Saccharomyces cerevisiae YJM975 tRNA-Glu
    120. Saccharomyces cerevisiae YJM978 tRNA-Glu
    121. Saccharomyces cerevisiae YJM981 tRNA-Glu
    122. Saccharomyces cerevisiae YJM984 tRNA-Glu
    123. Saccharomyces cerevisiae YJM987 tRNA-Glu
    124. Saccharomyces cerevisiae YJM990 tRNA-Glu
    125. Saccharomyces cerevisiae YJM993 tRNA-Glu
    126. Saccharomyces cerevisiae YJM996 tRNA-Glu
    127. Saccharomyces eubayanus tRNA-Glu
    128. Saccharomyces kudriavzevii IFO 1802 tRNA
    129. Saccharomyces pastorianus tRNA-Glu
    130. Tetrapisispora blattae CBS 6284 tRNA
    131. Tetrapisispora phaffii CBS 4417 tRNA
    132. Vanderwaltozyma polyspora DSM 70294 tRNA
    133. Xanthomonas citri pv. citri tRNA-Glu
    2D structure New