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16S ribosomal RNA from Escherichia coli (PDB 3J9Z, chain SA) secondary structure diagram

16S ribosomal RNA from Escherichia coli (PDB 3J9Z, chain SA) URS00000ABFE9_562

Automated summary: This rRNA sequence is 1,542 nucleotides long and is found in Escherichia coli. Annotated by 5 databases (CRW, SILVA, ENA, Modomics, PDBe). Has a conserved secondary structure or a structured region. Has an experimentally determined 3D structure. Matches 1 Rfam family (SSU_rRNA_bacteria, RF00177). 16S ribosomal RNA from Escherichia coli (PDB 3J9Z, chain SA) sequence is a product of rrsH, rrsA, rrsE, rrsB, rrsA (CGSC No. 189) genes.

Genome locations

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    Gene Ontology annotations

    Sequence

    Sequence features are shown above as colored rectangles. Zoom in and click to view details, or Reset

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    AAAUUGAAGAGUUUGAUCAUGGCUCAGAUUGAACGCUGGCGGCAGGCCUAACACAUGCAAGUCGAACGGUAACAGGAAGAAGCUUGCUUCUUUGCUGACGAGUGGCGGACGGGUGAGUAAUGUCUGGGAAACUGCCUGAUGGAGGGGGAUAACUACUGGAAACGGUAGCUAAUACCGCAUAACGUCGCAAGACCAAAGAGGGGGACCUUCGGGCCUCUUGCCAUCGGAUGUGCCCAGAUGGGAUUAGCUAGUAGGUGGGGUAACGGCUCACCUAGGCGACGAUCCCUAGCUGGUCUGAGAGGAUGACCAGCCACACUGGAACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGCAAGCCUGAUGCAGCCAUGCCGCGUGUAUGAAGAAGGCCUUCGGGUUGUAAAGUACUUUCAGCGGGGAGGAAGGGAGUAAAGUUAAUACCUUUGCUCAUUGACGUUACCCGCAGAAGAAGCACCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGUGCAAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGCACGCAGGCGGUUUGUUAAGUCAGAUGUGAAAUCCCCGGGCUCAACCUGGGAACUGCAUCUGAUACUGGCAAGCUUGAGUCUCGUAGAGGGGGGUAGAAUUCCAGGUGUAGCGGUGAAAUGCGUAGAGAUCUGGAGGAAUACCGGUGGCGAAGGCGGCCCCCUGGACGAAGACUGACGCUCAGGUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGUCGACUUGGAGGUUGUGCCCUUGAGGCGUGGCUUCCGGAGCUAACGCGUUAAGUCGACCGCCUGGGGAGUACGGCCGCAAGGUUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAACCUUACCUGGUCUUGACAUCCACGGAAGUUUUCAGAGAUGAGAAUGUGCCUUCGGGAACCGUGAGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUUGUGAAAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUAUCCUUUGUUGCCAGCGGUCCGGCCGGGAACUCAAAGGAGACUGCCAGUGAUAAACUGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGGCCCUUACGACCAGGGCUACACACGUGCUACAAUGGCGCAUACAAAGAGAAGCGACCUCGCGAGAGCAAGCGGACCUCAUAAAGUGCGUCGUAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUGAAGUCGGAAUCGCUAGUAAUCGUGGAUCAGAAUGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUGGGUUGCAAAAGAAGUAGGUAGCUUAACCUUCGGGAGGGCGCUUACCACUUUGUGAUUCAUGACUGGGGUGAAGUCGUAACAAGGUAACCGUAGGGGAACCUGCGGUUGGAUCACCUCCUUA

    Taxonomic tree

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    This sequence is found in 56 other species

    1. Escherichia coli BW25113 16S ribosomal RNA from Escherichia coli BW25113 (PDB 7OE0, chain A)
    2. Escherichia coli DH1 16S ribosomal RNA from Escherichia coli DH1 (PDB 4V6K, chain BA)
    3. Escherichia coli str. K-12 substr. MDS42 16S ribosomal RNA from Escherichia coli str. K-12 substr. MDS42 (PDB 4WOI, chain DA)
    4. Escherichia coli str. K-12 substr. MG1655 16S ribosomal RNA from Escherichia coli str. K-12 substr. MG1655 (PDB 7OE1, chain A)
    5. Escherichia coli K-12 16S rRNA (body domain of 30S subunit) from Escherichia coli K-12 (PDB 7BOD, chain A)
    6. Cloning vector pRNA8 bacterial SSU rRNA
    7. Clonorchis sinensis Bacterial small subunit ribosomal RNA
    8. Escherichia coli 2.3916 bacterial SSU rRNA
    9. Escherichia coli 2.4168 bacterial SSU rRNA
    10. Escherichia coli 3.2303 bacterial SSU rRNA
    11. Escherichia coli 5.0588 bacterial SSU rRNA
    12. Escherichia coli 53638 bacterial SSU rRNA
    13. Escherichia coli 900105 (10e) bacterial SSU rRNA
    14. Escherichia coli 97.0246 bacterial SSU rRNA
    15. Escherichia coli ATCC 8739 16S ribosomal RNA
    16. Escherichia coli B41 bacterial SSU rRNA
    17. Escherichia coli BW2952 bacterial SSU rRNA
    18. Escherichia coli EC4100B SSU rRNA
    19. Escherichia coli ER2796 bacterial SSU rRNA
    20. Escherichia coli ETEC H10407 bacterial SSU rRNA
    21. Escherichia coli IS25 SSU rRNA
    22. Escherichia coli KO11FL 16S ribosomal RNA
    23. Escherichia coli LY180 16S ribosomal RNA
    24. Escherichia coli O100:H21 16S ribosomal RNA
    25. Escherichia coli O141:H4 16S ribosomal RNA
    26. Escherichia coli O145:H28 str. RM12581 bacterial SSU rRNA
    27. Escherichia coli O145:H28 str. RM13514 bacterial SSU rRNA
    28. Escherichia coli O157:H16 16S ribosomal RNA
    29. Escherichia coli O157:H7 16S ribosomal RNA
    30. Escherichia coli O157:H7 str. 1044 SSU rRNA
    31. Escherichia coli O157:H7 str. EC1212 SSU rRNA
    32. Escherichia coli O157:H7 str. EC4042 bacterial SSU rRNA
    33. Escherichia coli O157:H7 str. EC4045 bacterial SSU rRNA
    34. Escherichia coli O157:H7 str. EC4115 bacterial SSU rRNA
    35. Escherichia coli O157:H7 str. EC4196 bacterial SSU rRNA
    36. Escherichia coli O157:H7 str. EC4206 bacterial SSU rRNA
    37. Escherichia coli O157:H7 str. TW14359 bacterial SSU rRNA
    38. Escherichia coli O158:H23 16S ribosomal RNA
    39. Escherichia coli O18ac:H14 16S ribosomal RNA
    40. Escherichia coli O39:H21 16S ribosomal RNA
    41. Escherichia coli O89m:H10 16S ribosomal RNA
    42. Escherichia coli O89m:H9 16S ribosomal RNA
    43. Escherichia coli SE11 bacterial SSU rRNA
    44. Escherichia coli str. K-12 substr. DH10B bacterial SSU rRNA
    45. Escherichia coli str. K-12 substr. MC4100 bacterial SSU rRNA
    46. Escherichia coli str. K-12 substr. W3110 bacterial SSU rRNA
    47. Escherichia coli UMN026 bacterial SSU rRNA
    48. Escherichia coli VR50 bacterial SSU rRNA
    49. Escherichia coli W 16S ribosomal RNA
    50. Escherichia fergusonii partial 16S ribosomal RNA
    51. Escherichia sp. TC-EC600-tetX4 16S ribosomal RNA
    52. Escherichia sp. TM-G17TGC 16S ribosomal RNA
    53. Shigella dysenteriae bacterial SSU rRNA
    54. Staphylococcus aureus 16S ribosomal RNA
    55. synthetic Escherichia coli C321.deltaA bacterial SSU rRNA
    56. uncultured bacterium SSU rRNA
     2D structure Publications