RNAcentral API

This is the RNAcentral Browsable API. When this page is opened in a browser, it is rendered as a human-friendly document, but when the same page is requested programmatically, the response is returned in a machine-readable format. See API documentation for more details.

Xref List

List of cross-references for a particular RNA sequence.

API documentation

GET /api/v1/rna/URS00027F7246/xrefs?format=api

HTTP 200 OK
    Content-Type: text/html; charset=utf-8
    Vary: Accept
    Allow: GET, HEAD, OPTIONS
    
    {
    "count": 1,
    "next": null,
    "previous": null,
    "results": [
        {
            "upi": "URS00027F7246",
            "database": "Ensembl",
            "is_active": true,
            "first_seen": "2023-10-31 00:00:00",
            "last_seen": "2024-02-22 00:00:00",
            "taxid": 9793,
            "accession": {
                "url": "http://rnacentral.org/api/v1/accession/ENSEAST00005078300.1/info?format=api",
                "id": "ENSEAST00005078300.1",
                "parent_ac": "5.ASM1607732v2",
                "seq_version": 1,
                "feature_start": 49557689,
                "feature_end": 49576618,
                "feature_name": "ncRNA",
                "description": "Equus asinus (ass) lncRNA",
                "external_id": "ENSEAST00005078300",
                "optional_id": "ENSEASG00005028808.1",
                "locus_tag": "",
                "species": "Equus asinus",
                "inference": "",
                "rna_type": "lncRNA",
                "gene": "ENSEASG00005028808.1",
                "product": "",
                "organelle": "",
                "citations": "http://rnacentral.org/api/v1/accession/ENSEAST00005078300.1/citations?format=api",
                "expert_db_url": "http://www.ensembl.org/equus_asinus/Transcript/Summary?t=ENSEAST00005078300",
                "standard_name": "",
                "pdb_entity_id": null,
                "pdb_structured_note": null,
                "hgnc_enembl_id": null,
                "hgnc_id": null,
                "biotype": "ncRNA",
                "srpdb_id": "ENSEAST00005078300",
                "ena_url": "https://www.ebi.ac.uk/ena/browser/view/Non-coding:ENSEAST00005078300.1",
                "ensembl_species_url": "equus_asinus",
                "malacards_diseases": null
            },
            "modifications": [],
            "is_rfam_seed": false,
            "ncbi_gene_id": null,
            "ndb_external_url": null,
            "mirbase_mature_products": null,
            "mirbase_precursor": null,
            "refseq_mirna_mature_products": null,
            "refseq_mirna_precursor": null,
            "refseq_splice_variants": null,
            "ensembl_splice_variants": [
                "http://rnacentral.org/rna/URS00027E63E3",
                "http://rnacentral.org/rna/URS00027EAC47",
                "http://rnacentral.org/rna/URS00027F7043",
                "http://rnacentral.org/rna/URS00027F9464"
            ],
            "gencode_transcript_id": null,
            "gencode_ensembl_url": null,
            "ensembl_url": null,
            "quickgo_hits": null
        }
    ]
}