Rfam Expert Database

Rfam is a collection of non-coding RNA families represented by manually curated sequence alignments, consensus secondary structures, and predicted homologues.

Overview

  • 5,298,941 distinct sequences from 430,777 organisms contributed to RNAcentral
  • the shortest sequence has 24 nucleotides, the longest 10,387
  • the average length is 430 nucleotides
  • database version: Rfam 12.1

Example entries

URS00000478B7, URS000066DAB6, URS000068EEC5

Browse all Rfam sequences

Links

References

Rfam 12.0: updates to the RNA families database.
Nawrocki EP, Burge SW, Bateman A, Daub J, Eberhardt RY, Eddy SR, Floden EW, Gardner PP, Jones TA, Tate J, Finn RD Nucleic Acids Res. 2015 Jan 28;43(Database issue):D130-7
PubMed
Rfam 11.0: 10 years of RNA families.
Burge SW, Daub J, Eberhardt R, Tate J, Barquist L, Nawrocki EP, Eddy SR, Gardner PP, Bateman A Nucleic Acids Res. 2013 Jan;41(Database issue):D226-32
PubMed

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