Sequence search {{params.status_message}}

Local alignment using nhmmer. search took {{ query.ended_at - query.enqueued_at | date:"m 'min' s 's'" }}
Examples: miRNA hsa-let-7a-1 (URS000004F5D8), 5S rRNA (URS0000049E57), NKILA lncRNA (URS00008120E1) {{get_query_length()}} nts

Searching... Searching for more matches...
No results


Results 1 alignment {{results.count | number}} alignments

  • {{result.description}} {{result.rnacentral_id}}

    E-value Identity Query coverage Target coverage Gaps
    {{format_evalue(result.e_value)}} {{result.identity | number:1}}% ({{result.match_count}}/{{result.alignment_length}}) {{result.query_coverage | number:1}}% ({{result.nts_count1}}/{{result.query_length}}) {{result.target_coverage | number:1}}% ({{result.nts_count2}}/{{result.target_length}}) {{result.gaps | number:1}}% ({{result.gap_count}}/{{result.alignment_length}})

Displaying {{results.alignments.length}} out of {{results.count | number}} alignments

Results Searching... 1 sequence {{result.entries.length}} out of {{result.hitCount | number}} sequences

Search help
There was an error while processing your query


  • Try reloading the page

  • Contact us if the problem persists

There was an error while exporting search results.
Please try again or contact us if the problem persists.
No results


  • Make sure your spelling is correct

    Example: misspelled terms like Esherichia (missing "c") won't find any results

  • Use full species names

    Example: use Escherichia coli and not E. coli as your search terms

  • Make sure to include double quotes in field-specific search using the field:"field value" format

  • Read more about query syntax

  • {{}}

    • {{rna.fields.length[0] | number}} nucleotides
    • Obsolete

Displaying {{result.entries.length}} out of {{result.hitCount | number}} sequences