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Homo sapiens (human) RNA, 18S ribosomal N1 (RNA18SN1, RNA18SN5) secondary structure diagram

Homo sapiens (human) RNA, 18S ribosomal N1 (RNA18SN1, RNA18SN5) URS0000726FAB_9606

Automated summary: This rRNA sequence is 1,869 nucleotides long and is found in Homo sapiens. Annotated by 6 databases (Rfam, HGNC, RefSeq, PDBe, GeneCards, IntAct). Has a conserved secondary structure or a structured region. Has an experimentally determined 3D structure. Matches 1 Rfam family (SSU_rRNA_eukarya, RF01960). Homo sapiens (human) RNA, 18S ribosomal N1 (RNA18SN1, RNA18SN5) sequence is a product of RNA18SN1, RNA18SN5 genes. Found in the human reference genome.

Interactions 9

According to IntAct, Homo sapiens (human) RNA, 18S ribosomal N1 (RNA18SN1, RNA18SN5) interacts with:

Interaction id Participant Synonyms
EBI-25818041 P39023 B2RDV9 EBI-1056348 HIV-1 TAR RNA-binding protein B Large ribosomal subunit protein uL3 OK/SW-cl.32 P39023 Q15548 Q5I0G0 RPL3 rl3_human
EBI-25818257 P40429 23 kDa highly basic protein A8K505 EBI-720205 Large ribosomal subunit protein uL13 P40429 RPL13A rl13a_human
EBI-25765746 P62081 EBI-354360 P23821 P24818 P62081 Q57Z92 Q6IPH1 RPS7 Small ribosomal subunit protein eS7 rs7_human
EBI-25818164 P62249 B2RDD5 EBI-352480 P17008 P62249 RPS16 Small ribosomal subunit protein uS9 rs16_human
EBI-25818756 P62269 D6S218E EBI-352451 Ke-3 P25232 P62269 Q5SUJ3 Q6IPF8 RPS18 Small ribosomal subunit protein uS13 rs18_human
EBI-25765006 P62277 B2R549 EBI-351850 P19116 P62277 Q02546 Q29200 Q498Y0 RPS13 Small ribosomal subunit protein uS15 rs13_human
EBI-25765694 P62847 E7EPK6 EBI-354515 P16632 P62847 Q5T0P7 Q5T0P8 Q7Z3D1 RPS24 Small ribosomal subunit protein eS24 rs24_human
EBI-25765553 P63244 B3KTJ0 Cell proliferation-inducing gene 21 protein D3DWS0 EBI-2559282 EBI-296739 EBI-923003 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1 Guanine nucleotide-binding protein subunit beta-like protein 12.3 HLC7 Human lung cancer oncogene 7 protein P25388 P63244 P99049 PIG21 Q53HU2 Q5J8M6 Q5VLR4 Q6FH47 RACK1 Receptor for activated C kinase Small ribosomal subunit protein RACK1 rack1_human
EBI-25818660 P83881 60S ribosomal protein L44 Cell growth-inhibiting gene 15 protein Cell migration-inducing gene 6 protein EBI-1054835 GIG15 Large ribosomal subunit protein eL42 MIG6 P09896 P10661 P83881 Q08ES5 Q5J9I6 RPL36A RPL44 rl36a_human

Genome locations

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    Gene Ontology annotations

    Sequence

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    UACCUGGUUGAUCCUGCCAGUAGCAUAUGCUUGUCUCAAAGAUUAAGCCAUGCAUGUCUGAGUACGCACGGCCGGUACAGUGAAACUGCGAAUGGCUCAUUAAAUCAGUUAUGGUUCCUUUGGUCGCUCGCUCCUCUCCUACUUGGAUAACUGUGGUAAUUCUAGAGCUAAUACAUGCCGACGGGCGCUGACCCCCUUCGCGGGGGGGAUGCGUGCAUUUAUCAGAUCAAAACCAACCCGGUCAGCCCCUCUCCGGCCCCGGCCGGGGGGCGGGCGCCGGCGGCUUUGGUGACUCUAGAUAACCUCGGGCCGAUCGCACGCCCCCCGUGGCGGCGACGACCCAUUCGAACGUCUGCCCUAUCAACUUUCGAUGGUAGUCGCCGUGCCUACCAUGGUGACCACGGGUGACGGGGAAUCAGGGUUCGAUUCCGGAGAGGGAGCCUGAGAAACGGCUACCACAUCCAAGGAAGGCAGCAGGCGCGCAAAUUACCCACUCCCGACCCGGGGAGGUAGUGACGAAAAAUAACAAUACAGGACUCUUUCGAGGCCCUGUAAUUGGAAUGAGUCCACUUUAAAUCCUUUAACGAGGAUCCAUUGGAGGGCAAGUCUGGUGCCAGCAGCCGCGGUAAUUCCAGCUCCAAUAGCGUAUAUUAAAGUUGCUGCAGUUAAAAAGCUCGUAGUUGGAUCUUGGGAGCGGGCGGGCGGUCCGCCGCGAGGCGAGCCACCGCCCGUCCCCGCCCCUUGCCUCUCGGCGCCCCCUCGAUGCUCUUAGCUGAGUGUCCCGCGGGGCCCGAAGCGUUUACUUUGAAAAAAUUAGAGUGUUCAAAGCAGGCCCGAGCCGCCUGGAUACCGCAGCUAGGAAUAAUGGAAUAGGACCGCGGUUCUAUUUUGUUGGUUUUCGGAACUGAGGCCAUGAUUAAGAGGGACGGCCGGGGGCAUUCGUAUUGCGCCGCUAGAGGUGAAAUUCUUGGACCGGCGCAAGACGGACCAGAGCGAAAGCAUUUGCCAAGAAUGUUUUCAUUAAUCAAGAACGAAAGUCGGAGGUUCGAAGACGAUCAGAUACCGUCGUAGUUCCGACCAUAAACGAUGCCGACCGGCGAUGCGGCGGCGUUAUUCCCAUGACCCGCCGGGCAGCUUCCGGGAAACCAAAGUCUUUGGGUUCCGGGGGGAGUAUGGUUGCAAAGCUGAAACUUAAAGGAAUUGACGGAAGGGCACCACCAGGAGUGGAGCCUGCGGCUUAAUUUGACUCAACACGGGAAACCUCACCCGGCCCGGACACGGACAGGAUUGACAGAUUGAUAGCUCUUUCUCGAUUCCGUGGGUGGUGGUGCAUGGCCGUUCUUAGUUGGUGGAGCGAUUUGUCUGGUUAAUUCCGAUAACGAACGAGACUCUGGCAUGCUAACUAGUUACGCGACCCCCGAGCGGUCGGCGUCCCCCAACUUCUUAGAGGGACAAGUGGCGUUCAGCCACCCGAGAUUGAGCAAUAACAGGUCUGUGAUGCCCUUAGAUGUCCGGGGCUGCACGCGCGCUACACUGACUGGCUCAGCGUGUGCCUACCCUACGCCGGCAGGCGCGGGUAACCCGUUGAACCCCAUUCGUGAUGGGGAUCGGGGAUUGCAAUUAUUCCCCAUGAACGAGGAAUUCCCAGUAAGUGCGGGUCAUAAGCUUGCGUUGAUUAAGUCCCUGCCCUUUGUACACACCGCCCGUCGCUACUACCGAUUGGAUGGUUUAGUGAGGCCCUCGGAUCGGCCCCGCCGGGGUCGGCCCACGGCCCUGGCGGAGCGCUGAGAAGACGGUCGAACUUGACUAUCUAGAGGAAGUAAAAGUCGUAACAAGGUUUCCGUAGGUGAACCUGCGGAAGGAUCAUUA

    Taxonomic tree

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    2D structure Publications New