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Saccharomyces cerevisiae S288C 25S ribosomal RNA secondary structure diagram

Saccharomyces cerevisiae S288C 25S ribosomal RNA URS000061F377_559292

Automated summary: This rRNA sequence is 3,396 nucleotides long and is found in Saccharomyces cerevisiae S288C. Annotated by 6 databases (SGD, SILVA, PDBe, IntAct, ENA, RefSeq). Described in 236 papers. Has a conserved secondary structure or a structured region. Has an experimentally determined 3D structure. Matches 1 Rfam family (LSU_rRNA_eukarya, RF02543). Saccharomyces cerevisiae S288C 25S ribosomal RNA sequence is a product of RDN25-1, RDN25-2 genes. Found in the Saccharomyces cerevisiae S288C reference genome.

Interactions 38

According to IntAct, Saccharomyces cerevisiae S288C 25S ribosomal RNA interacts with:

Interaction id Participant Synonyms
EBI-15095529 URS0000444F9B_559292 EBI-10821792 URS0000444F9B_559292 snru3a yeast
EBI-11792872 URS0000584350_559292 EBI-10829449 URS0000584350_559292 snr51 yeast
EBI-12513239 URS000049D796_559292 EBI-10916091 URS000049D796_559292 snr37_yeast_rna
EBI-15096978 URS000049D796_559292 EBI-10916091 URS000049D796_559292 snr37_yeast_rna
EBI-15095616 URS00000284F1_559292 EBI-10916343 URS00000284F1_559292 snr45 yeast
EBI-11711848 URS0000289A45_559292 EBI-10921248 URS0000289A45_559292 snr 43 yeast
EBI-11792594 URS000029384E_559292 EBI-10921278 URS000029384E_559292 snr80 yeast
EBI-12512971 URS0000492C43_559292 EBI-10921281 URS0000492C43_559292 snr34 yeast
EBI-12513252 URS00002B1EAA_559292 EBI-10921290 URS00002B1EAA_559292 snr46 yeast
EBI-11792650 URS00002C5EBE_559292 EBI-10921296 URS00002C5EBE_559292 snr189 yeast
EBI-15096976 URS000020D517_559292 EBI-10921918 URS000020D517_559292 snr38 yeast
EBI-11792764 URS00004957CB_559292 EBI-10922160 URS00004957CB_559292 snr13 yeast
EBI-11793549 URS00002B3180_559292 EBI-10922658 URS00002B3180_559292 snr61 yeast
EBI-11794792 URS00003E7141_559292 EBI-10948704 URS00003E7141_559292 snr73 yeast
EBI-15097088 URS000022816F_559292 EBI-10948722 URS000022816F_559292 snr77 yeast
EBI-11793625 URS000045C5A2_559292 EBI-10949017 URS000045C5A2_559292 snr66 yeast-1
EBI-11710845 URS000022B680_559292 EBI-10954474 URS000022B680_559292 snr72 yeast-1
EBI-11710861 URS00004E8887_559292 EBI-10954926 URS00004E8887_559292 snr76 yeast
EBI-15095618 URS000051C8F2_559292 EBI-10954929 URS000051C8F2_559292 snr39 yeast
EBI-11792772 URS000020FC3E_559292 EBI-10954933 URS000020FC3E_559292 snr39b yeast
EBI-11712254 URS000013DDAE_559292 EBI-10957299 URS000013DDAE_559292 snr5 yeast
EBI-11793647 URS00000434C9_559292 EBI-10961091 URS00000434C9_559292 snr69 yeast
EBI-11793579 URS00004A510B_559292 EBI-11793560 URS00004A510B_559292 snr62 yeast
EBI-11793607 URS00005B750F_559292 EBI-11793570 URS00005B750F_559292 snr64 yeast
EBI-11793616 URS00005C4DA5_559292 EBI-11793575 URS00005C4DA5_559292 snr65 yeast
EBI-11658785 P37838 D6W3X0 EBI-12122 NOP4 NOP77 Nucleolar protein NOP77 P37838 YPL043W nop4_yeast
EBI-11658921 P37838 D6W3X0 EBI-12122 NOP4 NOP77 Nucleolar protein NOP77 P37838 YPL043W nop4_yeast
EBI-11658884 P38779 CIC1 Core interacting component 1 D3DL01 EBI-24538 NSA3 P38779 YHR052W cic1_yeast
EBI-11665065 P38996 D6W3H8 EBI-11776 HMD1 NAB3 P38996 Q07034 YPL190C nab3_yeast
EBI-10918373 P53261 D6VUN5 EBI-13145 NOP7 Nucleolar protein 7 P53261 RRP13 Ribosomal RNA-processing protein 13 YGR103W YPH1 pesc_yeast
EBI-11658578 P53261 D6VUN5 EBI-13145 NOP7 Nucleolar protein 7 P53261 RRP13 Ribosomal RNA-processing protein 13 YGR103W YPH1 pesc_yeast
EBI-10918410 P53742 D6W1M8 EBI-28532 N3484 NOG2 P53742 YNR053C nog2_yeast
EBI-10918456 Q03862 ARX1 Associated with ribosomal export complex protein 1 D6VS88 EBI-31385 Q03862 YD8557.10c YDR101C arx1_yeast
EBI-11658771 Q04660 D6VZM4 EBI-28098 ERB1 Eukaryotic ribosome biogenesis protein 1 Q04660 YM9796.02C YMR049C erb1_yeast
EBI-10918512 Q05022 D6W054 EBI-16011 FMI1 Q05022 RRP5 Ribosomal RNA-processing protein 5 U3 small nucleolar RNA-associated protein RRP5 YM9959.11C YMR229C rrp5_yeast
EBI-11660231 Q06106 D6W4B1 EBI-34383 MRD1 Q06106 YPR112C mrd1_yeast
EBI-11660241 Q06106 D6W4B1 EBI-34383 MRD1 Q06106 YPR112C mrd1_yeast
EBI-11658903 Q08208 D6W225 EBI-35895 NOP12 Q08208 YOL041C nop12_yeast

Genome locations

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This sequence is found in {{ locations.length }} genome :

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    Gene Ontology annotations

    Sequence

    Sequence features are shown above as colored rectangles. Zoom in and click to view details, or Reset

    GUUUGACCUCAAAUCAGGUAGGAGUACCCGCUGAACUUAAGCAUAUCAAUAAGCGGAGGAAAAGAAACCAACCGGGAUUGCCUUAGUAACGGCGAGUGAAGCGGCAAAAGCUCAAAUUUGAAAUCUGGUACCUUCGGUGCCCGAGUUGUAAUUUGGAGAGGGCAACUUUGGGGCCGUUCCUUGUCUAUGUUCCUUGGAACAGGACGUCAUAGAGGGUGAGAAUCCCGUGUGGCGAGGAGUGCGGUUCUUUGUAAAGUGCCUUCGAAGAGUCGAGUUGUUUGGGAAUGCAGCUCUAAGUGGGUGGUAAAUUCCAUCUAAAGCUAAAUAUUGGCGAGAGACCGAUAGCGAACAAGUACAGUGAUGGAAAGAUGAAAAGAACUUUGAAAAGAGAGUGAAAAAGUACGUGAAAUUGUUGAAAGGGAAGGGCAUUUGAUCAGACAUGGUGUUUUGUGCCCUCUGCUCCUUGUGGGUAGGGGAAUCUCGCAUUUCACUGGGCCAGCAUCAGUUUUGGUGGCAGGAUAAAUCCAUAGGAAUGUAGCUUGCCUCGGUAAGUAUUAUAGCCUGUGGGAAUACUGCCAGCUGGGACUGAGGACUGCGACGUAAGUCAAGGAUGCUGGCAUAAUGGUUAUAUGCCGCCCGUCUUGAAACACGGACCAAGGAGUCUAACGUCUAUGCGAGUGUUUGGGUGUAAAACCCAUACGCGUAAUGAAAGUGAACGUAGGUUGGGGCCUCGCAAGAGGUGCACAAUCGACCGAUCCUGAUGUCUUCGGAUGGAUUUGAGUAAGAGCAUAGCUGUUGGGACCCGAAAGAUGGUGAACUAUGCCUGAAUAGGGUGAAGCCAGAGGAAACUCUGGUGGAGGCUCGUAGCGGUUCUGACGUGCAAAUCGAUCGUCGAAUUUGGGUAUAGGGGCGAAAGACUAAUCGAACCAUCUAGUAGCUGGUUCCUGCCGAAGUUUCCCUCAGGAUAGCAGAAGCUCGUAUCAGUUUUAUGAGGUAAAGCGAAUGAUUAGAGGUUCCGGGGUCGAAAUGACCUUGACCUAUUCUCAAACUUUAAAUAUGUAAGAAGUCCUUGUUACUUAAUUGAACGUGGACAUUUGAAUGAAGAGCUUUUAGUGGGCCAUUUUUGGUAAGCAGAACUGGCGAUGCGGGAUGAACCGAACGUAGAGUUAAGGUGCCGGAAUACACGCUCAUCAGACACCACAAAAGGUGUUAGUUCAUCUAGACAGCCGGACGGUGGCCAUGGAAGUCGGAAUCCGCUAAGGAGUGUGUAACAACUCACCGGCCGAAUGAACUAGCCCUGAAAAUGGAUGGCGCUCAAGCGUGUUACCUAUACUCUACCGUCAGGGUUGAUAUGAUGCCCUGACGAGUAGGCAGGCGUGGAGGUCAGUGACGAAGCCUAGACCGUAAGGUCGGGUCGAACGGCCUCUAGUGCAGAUCUUGGUGGUAGUAGCAAAUAUUCAAAUGAGAACUUUGAAGACUGAAGUGGGGAAAGGUUCCACGUCAACAGCAGUUGGACGUGGGUUAGUCGAUCCUAAGAGAUGGGGAAGCUCCGUUUCAAAGGCCUGAUUUUAUGCAGGCCACCAUCGAAAGGGAAUCCGGUUAAGAUUCCGGAACCUGGAUAUGGAUUCUUCACGGUAACGUAACUGAAUGUGGAGACGUCGGCGCGAGCCCUGGGAGGAGUUAUCUUUUCUUCUUAACAGCUUAUCACCCCGGAAUUGGUUUAUCCGGAGAUGGGGUCUUAUGGCUGGAAGAGGCCAGCACCUUUGCUGGCUCCGGUGCGCUUGUGACGGCCCGUGAAAAUCCACAGGAAGGAAUAGUUUUCAUGCCAGGUCGUACUGAUAACCGCAGCAGGUCUCCAAGGUGAACAGCCUCUAGUUGAUAGAAUAAUGUAGAUAAGGGAAGUCGGCAAAAUAGAUCCGUAACUUCGGGAUAAGGAUUGGCUCUAAGGGUCGGGUAGUGAGGGCCUUGGUCAGACGCAGCGGGCGUGCUUGUGGACUGCUUGGUGGGGCUUGCUCUGCUAGGCGGACUACUUGCGUGCCUUGUUGUAGACGGCCUUGGUAGGUCUCUUGUAGACCGUCGCUUGCUACAAUUAACGAUCAACUUAGAACUGGUACGGACAAGGGGAAUCUGACUGUCUAAUUAAAACAUAGCAUUGCGAUGGUCAGAAAGUGAUGUUGACGCAAUGUGAUUUCUGCCCAGUGCUCUGAAUGUCAAAGUGAAGAAAUUCAACCAAGCGCGGGUAAACGGCGGGAGUAACUAUGACUCUCUUAAGGUAGCCAAAUGCCUCGUCAUCUAAUUAGUGACGCGCAUGAAUGGAUUAACGAGAUUCCCACUGUCCCUAUCUACUAUCUAGCGAAACCACAGCCAAGGGAACGGGCUUGGCAGAAUCAGCGGGGAAAGAAGACCCUGUUGAGCUUGACUCUAGUUUGACAUUGUGAAGAGACAUAGAGGGUGUAGAAUAAGUGGGAGCUUCGGCGCCAGUGAAAUACCACUACCUUUAUAGUUUCUUUACUUAUUCAAUGAAGCGGAGCUGGAAUUCAUUUUCCACGUUCUAGCAUUCAAGGUCCCAUUCGGGGCUGAUCCGGGUUGAAGACAUUGUCAGGUGGGGAGUUUGGCUGGGGCGGCACAUCUGUUAAACGAUAACGCAGAUGUCCUAAGGGGGGCUCAUGGAGAACAGAAAUCUCCAGUAGAACAAAAGGGUAAAAGCCCCCUUGAUUUUGAUUUUCAGUGUGAAUACAAACCAUGAAAGUGUGGCCUAUCGAUCCUUUAGUCCCUCGGAAUUUGAGGCUAGAGGUGCCAGAAAAGUUACCACAGGGAUAACUGGCUUGUGGCAGUCAAGCGUUCAUAGCGACAUUGCUUUUUGAUUCUUCGAUGUCGGCUCUUCCUAUCAUACCGAAGCAGAAUUCGGUAAGCGUUGGAUUGUUCACCCACUAAUAGGGAACGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUUAGUUUUACCCUACUGAUGAAUGUUACCGCAAUAGUAAUUGAACUUAGUACGAGAGGAACAGUUCAUUCGGAUAAUUGGUUUUUGCGGCUGUCUGAUCAGGCAUUGCCGCGAAGCUACCAUCCGCUGGAUUAUGGCUGAACGCCUCUAAGUCAGAAUCCAUGCUAGAACGCGGUGAUUUCUUUGCUCCACACAAUAUAGAUGGAUACGAAUAAGGCGUCCUUGUGGCGUCGCUGAACCAUAGCAGGCUAGCAACGGUGCACUUGGCGGAAAGGCCUUGGGUGCUUGCUGGCGAAUUGCAAUGUCAUUUUGCGUGGGGAUAAAUCAUUUGUAUACGACUUAGAUGUACAACGGGGUAUUGUAAGCAGUAGAGUAGCCUUGUUGUUACGAUCUGCUGAGAUUAAGCCUUUGUUGUCUGAUUUGU

    Taxonomic tree

    View annotations in different species by clicking on species names.

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    This sequence is found in 90 other species

    1. Saccharomyces cerevisiae 25S ribosomal RNA from Saccharomyces cerevisiae (PDB 6T83, chain 1b)
    2. Saccharomyces cerevisiae Kyokai no. 7 25S rRNA
    3. Saccharomyces cerevisiae PE-2 RDN25-1
    4. Saccharomyces cerevisiae YJM1078 RDN25-13
    5. Saccharomyces cerevisiae YJM1083 RDN25-46
    6. Saccharomyces cerevisiae YJM1129 RDN25-30
    7. Saccharomyces cerevisiae YJM1133 RDN25-40
    8. Saccharomyces cerevisiae YJM1190 RDN25-34
    9. Saccharomyces cerevisiae YJM1199 RDN25-30
    10. Saccharomyces cerevisiae YJM1202 RDN25-34
    11. Saccharomyces cerevisiae YJM1208 RDN25-134
    12. Saccharomyces cerevisiae YJM1242 RDN25-30
    13. Saccharomyces cerevisiae YJM1244 RDN25-103
    14. Saccharomyces cerevisiae YJM1250 RDN25-34
    15. Saccharomyces cerevisiae YJM1273 RDN25-40
    16. Saccharomyces cerevisiae YJM1304 RDN25-67
    17. Saccharomyces cerevisiae YJM1307 RDN25-146
    18. Saccharomyces cerevisiae YJM1311 RDN25-40
    19. Saccharomyces cerevisiae YJM1326 RDN25-40
    20. Saccharomyces cerevisiae YJM1332 RDN25-40
    21. Saccharomyces cerevisiae YJM1336 RDN25-104
    22. Saccharomyces cerevisiae YJM1338 RDN25-40
    23. Saccharomyces cerevisiae YJM1341 RDN25-60
    24. Saccharomyces cerevisiae YJM1342 RDN25-60
    25. Saccharomyces cerevisiae YJM1355 RDN25-104
    26. Saccharomyces cerevisiae YJM1356 RDN25-104
    27. Saccharomyces cerevisiae YJM1381 RDN25-40
    28. Saccharomyces cerevisiae YJM1383 RDN25-40
    29. Saccharomyces cerevisiae YJM1385 RDN25-104
    30. Saccharomyces cerevisiae YJM1386 RDN25-40
    31. Saccharomyces cerevisiae YJM1387 RDN25-104
    32. Saccharomyces cerevisiae YJM1388 RDN25-40
    33. Saccharomyces cerevisiae YJM1389 RDN25-40
    34. Saccharomyces cerevisiae YJM1399 RDN25-40
    35. Saccharomyces cerevisiae YJM1400 RDN25-36
    36. Saccharomyces cerevisiae YJM1401 RDN25-36
    37. Saccharomyces cerevisiae YJM1402 RDN25-36
    38. Saccharomyces cerevisiae YJM1415 RDN25-30
    39. Saccharomyces cerevisiae YJM1417 RDN25-30
    40. Saccharomyces cerevisiae YJM1418 RDN25-30
    41. Saccharomyces cerevisiae YJM1419 RDN25-203
    42. Saccharomyces cerevisiae YJM1433 RDN25-60
    43. Saccharomyces cerevisiae YJM1434 RDN25-60
    44. Saccharomyces cerevisiae YJM1443 RDN25-60
    45. Saccharomyces cerevisiae YJM1444 RDN25-30
    46. Saccharomyces cerevisiae YJM1447 RDN25-30
    47. Saccharomyces cerevisiae YJM1450 RDN25-136
    48. Saccharomyces cerevisiae YJM1460 RDN25-37
    49. Saccharomyces cerevisiae YJM1477 RDN25-30
    50. Saccharomyces cerevisiae YJM1478 RDN25-103
    51. Saccharomyces cerevisiae YJM1479 RDN25-30
    52. Saccharomyces cerevisiae YJM1526 RDN25-30
    53. Saccharomyces cerevisiae YJM1527 RDN25-103
    54. Saccharomyces cerevisiae YJM1549 RDN25-103
    55. Saccharomyces cerevisiae YJM1573 RDN25-40
    56. Saccharomyces cerevisiae YJM1592 RDN25-30
    57. Saccharomyces cerevisiae YJM1615 RDN25-30
    58. Saccharomyces cerevisiae YJM189 RDN25-30
    59. Saccharomyces cerevisiae YJM193 RDN25-104
    60. Saccharomyces cerevisiae YJM195 RDN25-103
    61. Saccharomyces cerevisiae YJM244 RDN25-103
    62. Saccharomyces cerevisiae YJM248 RDN25-10
    63. Saccharomyces cerevisiae YJM271 RDN25-103
    64. Saccharomyces cerevisiae YJM320 RDN25-146
    65. Saccharomyces cerevisiae YJM326 RDN25-10
    66. Saccharomyces cerevisiae YJM428 RDN25-10
    67. Saccharomyces cerevisiae YJM450 RDN25-13
    68. Saccharomyces cerevisiae YJM451 RDN25-30
    69. Saccharomyces cerevisiae YJM453 RDN25-106
    70. Saccharomyces cerevisiae YJM456 RDN25-10
    71. Saccharomyces cerevisiae YJM470 RDN25-103
    72. Saccharomyces cerevisiae YJM541 RDN25-103
    73. Saccharomyces cerevisiae YJM554 RDN25-103
    74. Saccharomyces cerevisiae YJM555 RDN25-103
    75. Saccharomyces cerevisiae YJM681 RDN25-30
    76. Saccharomyces cerevisiae YJM682 RDN25-10
    77. Saccharomyces cerevisiae YJM683 RDN25-10
    78. Saccharomyces cerevisiae YJM689 RDN25-10
    79. Saccharomyces cerevisiae YJM969 RDN25-10
    80. Saccharomyces cerevisiae YJM972 RDN25-103
    81. Saccharomyces cerevisiae YJM975 RDN25-10
    82. Saccharomyces cerevisiae YJM978 RDN25-100
    83. Saccharomyces cerevisiae YJM981 RDN25-103
    84. Saccharomyces cerevisiae YJM984 RDN25-103
    85. Saccharomyces cerevisiae YJM987 RDN25-103
    86. Saccharomyces cerevisiae YJM990 RDN25-13
    87. Saccharomyces cerevisiae YJM993 RDN25-10
    88. Saccharomyces cerevisiae YJM996 RDN25-103
    89. synthetic construct eukaryotic LSU rRNA
    2D structure New