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Saccharomyces cerevisiae S288C 18S ribosomal RNA secondary structure diagram

Saccharomyces cerevisiae S288C 18S ribosomal RNA URS00005F2C2D_559292

Automated summary: This rRNA sequence is 1,800 nucleotides long and is found in Saccharomyces cerevisiae S288C. Annotated by 7 databases (PDBe, SGD, IntAct, RefSeq, SILVA, ENA, Rfam). Described in 228 papers. Has a conserved secondary structure or a structured region. Has an experimentally determined 3D structure. Matches 1 Rfam family (SSU_rRNA_eukarya, RF01960). Saccharomyces cerevisiae S288C 18S ribosomal RNA sequence is a product of 18S ribosomal RN, 18S ribosomal RNA, RDN18-1, RDN18-2, pre-18S ribosomal RNA genes. Found in the Saccharomyces cerevisiae S288C reference genome.

Interactions 31

According to IntAct, Saccharomyces cerevisiae S288C 18S ribosomal RNA interacts with:

IntAct ID Participant Synonyms
EBI-10821772 URS0000398E29_559292 EBI-10821750 URS0000398E29_559292 snr30_yeast_rna
EBI-10826103 URS0000182FAB_559292 EBI-10821812 URS0000182FAB_559292 snru14 yeast
EBI-14061553 URS0000182FAB_559292 EBI-10821812 URS0000182FAB_559292 snru14 yeast
EBI-11792807 URS0000584350_559292 EBI-10829449 URS0000584350_559292 snr51 yeast
EBI-11622171 intact:EBI-10896468 EBI-10896468 rrna 23s
EBI-12512908 URS000024F0F7_559292 EBI-10916266 URS000024F0F7_559292 snr31 yeast
EBI-11791853 URS000057FD8B_559292 EBI-10921239 URS000057FD8B_559292 snr85 yeast
EBI-11712262 URS0000604143_559292 EBI-10921287 URS0000604143_559292 snr36 yeast
EBI-11790234 URS0000525571_559292 EBI-10921293 URS0000525571_559292 snr49 yeast
EBI-11790403 URS0000525571_559292 EBI-10921293 URS0000525571_559292 snr49 yeast
EBI-15095542 URS00002AFD52_559292 EBI-10921362 URS00002AFD52_559292 snr18 yeast
EBI-15095550 URS00002D9DEC_559292 EBI-10921911 URS00002D9DEC_559292 snr24 yeast u24
EBI-11792797 URS0000176EA1_559292 EBI-10921924 URS0000176EA1_559292 snr41 yeast
EBI-11711723 URS00001C2E5F_559292 EBI-10948707 URS00001C2E5F_559292 snr74 yeast
EBI-11711732 URS000022816F_559292 EBI-10948722 URS000022816F_559292 snr77 yeast
EBI-11794836 URS000022816F_559292 EBI-10948722 URS000022816F_559292 snr77 yeast
EBI-11794805 URS0000600F12_559292 EBI-10948729 URS0000600F12_559292 snr79 yeast
EBI-11793451 URS0000103F8F_559292 EBI-11793466 URS0000103F8F_559292 snr53 yeast
EBI-10821412 P45818 D6VTY1 EBI-15686 G1651 P45818 ROK1 Rescuer of KEM1 protein 1 YGL171W rok1_yeast
EBI-10821448 P45818 D6VTY1 EBI-15686 G1651 P45818 ROK1 Rescuer of KEM1 protein 1 YGL171W rok1_yeast
EBI-10903463 P53866 D6W0W6 EBI-29168 N1269 P53866 SQS1 Squelch of splicing suppression protein 1 YNL224C sqs1_yeast
EBI-11659349 P53914 18S rRNA cytosine acetyltransferase D6W150 EBI-28914 KRE33 Killer toxin-resistance protein 33 N1216 N1858 NAT10 P53914 RRA1 Ribosomal RNA cytidine acetyltransferase 1 YNL132W nat10_yeast
EBI-11660265 Q06106 D6W4B1 EBI-34383 MRD1 Q06106 YPR112C mrd1_yeast
EBI-11660212 Q06106 D6W4B1 EBI-34383 MRD1 Q06106 YPR112C mrd1_yeast
EBI-11660155 Q06106 D6W4B1 EBI-34383 MRD1 Q06106 YPR112C mrd1_yeast
EBI-11664376 Q06287 18S rRNA (pseudouridine(1189)-N1)-methyltransferase D6VYI9 E9P8U2 EBI-11979 EMG1 Essential for mitotic growth protein 1 L9470.5 NEP1 Nucleolar essential protein 1 Q06287 YLR186W nep1_yeast
EBI-10916010 Q06287 18S rRNA (pseudouridine(1189)-N1)-methyltransferase D6VYI9 E9P8U2 EBI-11979 EMG1 Essential for mitotic growth protein 1 L9470.5 NEP1 Nucleolar essential protein 1 Q06287 YLR186W nep1_yeast
EBI-10903990 Q06287 18S rRNA (pseudouridine(1189)-N1)-methyltransferase D6VYI9 E9P8U2 EBI-11979 EMG1 Essential for mitotic growth protein 1 L9470.5 NEP1 Nucleolar essential protein 1 Q06287 YLR186W nep1_yeast
EBI-10949527 Q08444 D6W2B9 EBI-29777 NIN1-binding protein NOB1 O00021 Pre-rRNA-processing endonuclease NOB1 Q08444 YOR056C YOR29-07 nob1_yeast
EBI-11684427 Q12339 D6W270 EBI-30231 Q12339 U three protein 23 U3 small nucleolar RNA-associated protein 23 UTP23 YOR004W utp23_yeast
EBI-10949575 Q99216 D6W2K3 DIM2 EBI-31176 O3513 PNO1 Partner of NOB1 Q02462 Q7LHP7 Q99216 RRP20 Ribosomal RNA-processing protein 20 YOR145C YOR3513C pno1_yeast

Genome locations

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    Gene Ontology annotations

    Sequence

    Sequence features are shown above as colored rectangles. Zoom in and click to view details, or Reset

    UAUCUGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUCUCAAAGAUUAAGCCAUGCAUGUCUAAGUAUAAGCAAUUUAUACAGUGAAACUGCGAAUGGCUCAUUAAAUCAGUUAUCGUUUAUUUGAUAGUUCCUUUACUACAUGGUAUAACUGUGGUAAUUCUAGAGCUAAUACAUGCUUAAAAUCUCGACCCUUUGGAAGAGAUGUAUUUAUUAGAUAAAAAAUCAAUGUCUUCGGACUCUUUGAUGAUUCAUAAUAACUUUUCGAAUCGCAUGGCCUUGUGCUGGCGAUGGUUCAUUCAAAUUUCUGCCCUAUCAACUUUCGAUGGUAGGAUAGUGGCCUACCAUGGUUUCAACGGGUAACGGGGAAUAAGGGUUCGAUUCCGGAGAGGGAGCCUGAGAAACGGCUACCACAUCCAAGGAAGGCAGCAGGCGCGCAAAUUACCCAAUCCUAAUUCAGGGAGGUAGUGACAAUAAAUAACGAUACAGGGCCCAUUCGGGUCUUGUAAUUGGAAUGAGUACAAUGUAAAUACCUUAACGAGGAACAAUUGGAGGGCAAGUCUGGUGCCAGCAGCCGCGGUAAUUCCAGCUCCAAUAGCGUAUAUUAAAGUUGUUGCAGUUAAAAAGCUCGUAGUUGAACUUUGGGCCCGGUUGGCCGGUCCGAUUUUUUCGUGUACUGGAUUUCCAACGGGGCCUUUCCUUCUGGCUAACCUUGAGUCCUUGUGGCUCUUGGCGAACCAGGACUUUUACUUUGAAAAAAUUAGAGUGUUCAAAGCAGGCGUAUUGCUCGAAUAUAUUAGCAUGGAAUAAUAGAAUAGGACGUUUGGUUCUAUUUUGUUGGUUUCUAGGACCAUCGUAAUGAUUAAUAGGGACGGUCGGGGGCAUCAGUAUUCAAUUGUCAGAGGUGAAAUUCUUGGAUUUAUUGAAGACUAACUACUGCGAAAGCAUUUGCCAAGGACGUUUUCAUUAAUCAAGAACGAAAGUUAGGGGAUCGAAGAUGAUCAGAUACCGUCGUAGUCUUAACCAUAAACUAUGCCGACUAGGGAUCGGGUGGUGUUUUUUUAAUGACCCACUCGGCACCUUACGAGAAAUCAAAGUCUUUGGGUUCUGGGGGGAGUAUGGUCGCAAGGCUGAAACUUAAAGGAAUUGACGGAAGGGCACCACCAGGAGUGGAGCCUGCGGCUUAAUUUGACUCAACACGGGGAAACUCACCAGGUCCAGACACAAUAAGGAUUGACAGAUUGAGAGCUCUUUCUUGAUUUUGUGGGUGGUGGUGCAUGGCCGUUCUUAGUUGGUGGAGUGAUUUGUCUGCUUAAUUGCGAUAACGAACGAGACCUUAACCUACUAAAUAGUGGUGCUAGCAUUUGCUGGUUAUCCACUUCUUAGAGGGACUAUCGGUUUCAAGCCGAUGGAAGUUUGAGGCAAUAACAGGUCUGUGAUGCCCUUAGACGUUCUGGGCCGCACGCGCGCUACACUGACGGAGCCAGCGAGUCUAACCUUGGCCGAGAGGUCUUGGUAAUCUUGUGAAACUCCGUCGUGCUGGGGAUAGAGCAUUGUAAUUAUUGCUCUUCAACGAGGAAUUCCUAGUAAGCGCAAGUCAUCAGCUUGCGUUGAUUACGUCCCUGCCCUUUGUACACACCGCCCGUCGCUAGUACCGAUUGAAUGGCUUAGUGAGGCCUCAGGAUCUGCUUAGAGAAGGGGGCAACUCCAUCUCAGAGCGGAGAAUUUGGACAAACUUGGUCAUUUAGAGGAACUAAAAGUCGUAACAAGGUUUCCGUAGGUGAACCUGCGGAAGGAUCAUUA

    Taxonomic tree

    View annotations in different species by clicking on species names.

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    This sequence is found in 84 other species

    1. Chaetomium thermophilum 18S Ribosomal RNA from Chaetomium thermophilum (PDB 5JPQ, chain 2)
    2. Saccharomyces cerevisiae 18S Ribosomal RNA from Saccharomyces cerevisiae (PDB 6T83, chain 2b)
    3. Blumeria graminis f. sp. hordei DH14 Eukaryotic small subunit ribosomal RNA
    4. Saccharomyces cerevisiae Kyokai no. 7 18S rRNA
    5. Saccharomyces cerevisiae PE-2 RDN18-1
    6. Saccharomyces cerevisiae YJM1078 RDN18-23
    7. Saccharomyces cerevisiae YJM1129 RDN18-30
    8. Saccharomyces cerevisiae YJM1133 RDN18-20
    9. Saccharomyces cerevisiae YJM1190 RDN18-23
    10. Saccharomyces cerevisiae YJM1199 RDN18-20
    11. Saccharomyces cerevisiae YJM1202 RDN18-34
    12. Saccharomyces cerevisiae YJM1208 RDN18-34
    13. Saccharomyces cerevisiae YJM1242 RDN18-30
    14. Saccharomyces cerevisiae YJM1244 RDN18-30
    15. Saccharomyces cerevisiae YJM1248 RDN18-30
    16. Saccharomyces cerevisiae YJM1250 SSU rRNA
    17. Saccharomyces cerevisiae YJM1252 RDN18-30
    18. Saccharomyces cerevisiae YJM1273 RDN18-40
    19. Saccharomyces cerevisiae YJM1304 RDN18-25
    20. Saccharomyces cerevisiae YJM1311 RDN18-20
    21. Saccharomyces cerevisiae YJM1332 RDN18-40
    22. Saccharomyces cerevisiae YJM1336 RDN18-20
    23. Saccharomyces cerevisiae YJM1338 RDN18-20
    24. Saccharomyces cerevisiae YJM1341 RDN18-20
    25. Saccharomyces cerevisiae YJM1342 RDN18-50
    26. Saccharomyces cerevisiae YJM1356 RDN18-20
    27. Saccharomyces cerevisiae YJM1381 RDN18-20
    28. Saccharomyces cerevisiae YJM1385 RDN18-20
    29. Saccharomyces cerevisiae YJM1386 RDN18-20
    30. Saccharomyces cerevisiae YJM1387 RDN18-20
    31. Saccharomyces cerevisiae YJM1388 RDN18-20
    32. Saccharomyces cerevisiae YJM1389 RDN18-20
    33. Saccharomyces cerevisiae YJM1399 RDN18-20
    34. Saccharomyces cerevisiae YJM1400 RDN18-23
    35. Saccharomyces cerevisiae YJM1401 RDN18-23
    36. Saccharomyces cerevisiae YJM1402 RDN18-35
    37. Saccharomyces cerevisiae YJM1415 RDN18-20
    38. Saccharomyces cerevisiae YJM1417 RDN18-20
    39. Saccharomyces cerevisiae YJM1418 RDN18-20
    40. Saccharomyces cerevisiae YJM1419 RDN18-203
    41. Saccharomyces cerevisiae YJM1434 RDN18-20
    42. Saccharomyces cerevisiae YJM1439 RDN18-20
    43. Saccharomyces cerevisiae YJM1443 RDN18-20
    44. Saccharomyces cerevisiae YJM1444 RDN18-20
    45. Saccharomyces cerevisiae YJM1447 RDN18-20
    46. Saccharomyces cerevisiae YJM1450 RDN18-23
    47. Saccharomyces cerevisiae YJM1463 RDN18-20
    48. Saccharomyces cerevisiae YJM1477 RDN18-20
    49. Saccharomyces cerevisiae YJM1478 RDN18-20
    50. Saccharomyces cerevisiae YJM1479 RDN18-20
    51. Saccharomyces cerevisiae YJM1526 RDN18-30
    52. Saccharomyces cerevisiae YJM1527 RDN18-30
    53. Saccharomyces cerevisiae YJM1549 RDN18-20
    54. Saccharomyces cerevisiae YJM1573 RDN18-20
    55. Saccharomyces cerevisiae YJM1592 RDN18-30
    56. Saccharomyces cerevisiae YJM1615 RDN18-20
    57. Saccharomyces cerevisiae YJM189 RDN18-20
    58. Saccharomyces cerevisiae YJM193 RDN18-20
    59. Saccharomyces cerevisiae YJM195 RDN18-20
    60. Saccharomyces cerevisiae YJM244 RDN18-103
    61. Saccharomyces cerevisiae YJM248 RDN18-30
    62. Saccharomyces cerevisiae YJM271 RDN18-203
    63. Saccharomyces cerevisiae YJM320 RDN18-145
    64. Saccharomyces cerevisiae YJM326 RDN18-40
    65. Saccharomyces cerevisiae YJM428 RDN18-30
    66. Saccharomyces cerevisiae YJM450 RDN18-23
    67. Saccharomyces cerevisiae YJM453 RDN18-102
    68. Saccharomyces cerevisiae YJM456 RDN18-20
    69. Saccharomyces cerevisiae YJM470 RDN18-23
    70. Saccharomyces cerevisiae YJM541 RDN18-20
    71. Saccharomyces cerevisiae YJM554 RDN18-102
    72. Saccharomyces cerevisiae YJM627 RDN18-103
    73. Saccharomyces cerevisiae YJM681 RDN18-20
    74. Saccharomyces cerevisiae YJM689 RDN18-20
    75. Saccharomyces cerevisiae YJM969 RDN18-20
    76. Saccharomyces cerevisiae YJM972 RDN18-103
    77. Saccharomyces cerevisiae YJM975 RDN18-20
    78. Saccharomyces cerevisiae YJM978 RDN18-102
    79. Saccharomyces cerevisiae YJM981 RDN18-20
    80. Saccharomyces cerevisiae YJM984 RDN18-102
    81. Saccharomyces cerevisiae YJM987 RDN18-102
    82. Saccharomyces cerevisiae YJM990 RDN18-23
    83. Saccharomyces cerevisiae YJM993 RDN18-20
    84. Saccharomyces cerevisiae YJM996 RDN18-102
    85. Saccharomyces paradoxus NRRL Y-17217 SSU rRNA
    2D structure New