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Saccharomyces cerevisiae S288C Small Nucleolar RNA secondary structure diagram

Saccharomyces cerevisiae S288C Small Nucleolar RNA URS000049D796_559292

Automated summary: This snoRNA sequence is 386 nucleotides long and is found in Saccharomyces cerevisiae S288C. Annotated by 5 databases (IntAct, ENA, RefSeq, SGD, Rfam). Has a conserved secondary structure or a structured region. Matches 1 Rfam family (snR37, RF01267). Saccharomyces cerevisiae S288C Small Nucleolar RNA sequence is a product of SNR37 gene. Found in the Saccharomyces cerevisiae S288C reference genome.

Interactions 4

According to IntAct, Saccharomyces cerevisiae S288C Small Nucleolar RNA interacts with:

Interaction id Participant Synonyms
EBI-10959662 P02309 D6VQ10 EBI-8113 HHF1 HHF2 N2752 P02309 YBR009C YBR0122 YNL030W h4_yeast
EBI-11169571 P28007 D3DL41 EBI-7321 GAR1 P28007 YHR089C gar1_yeast snoRNP protein GAR1
EBI-11179170 P28007 D3DL41 EBI-7321 GAR1 P28007 YHR089C gar1_yeast snoRNP protein GAR1
EBI-11179184 P32495 D1045 D6VRE6 EBI-12014 H/ACA snoRNP protein NHP2 High mobility group-like nuclear protein 2 NHP2 P32495 YDL208W nhp2_yeast

Genome locations

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    Gene Ontology annotations

    Localisation

    Sequence

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    AACAUCAGUAGUGGUUAAUACUAUCUUUAGAUAAUAUUAAUUUCAUUAUACCAUAGAAACCUAAAGAUUAGGUUAUUUUCGUUCUUCAUGUUAUGGAGUGUGAGUGAUGAGGAGCUUGCUCUUUUAAGCUCAUAUUACGUAAUAAGUUAAUACUGGAGCGAGAAUAAUUUAAAUCAUUUCAUCAUAACCCAUAGCUGAAUGAACUUUGACUACUCCUAAACAAAGUAGUAACAAUUUUCAUUUCGUUUCCGGUUUCUUAGAUCGAAUAUUAUUCUGAGGAAAUUCCCUGAUUACAUAUCAGGGAAAGGUUCGCGUUUUUAGAGAAUUGCGUAAUGCGAUUUGAAAGUUUAAAUUCCUAAGCGACUCUUCUUCAUGAUAAGACAGUU

    Taxonomic tree

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    This sequence is found in 2 other species

    1. Saccharomyces cerevisiae Small nucleolar RNA snR37
    2. Saccharomyces cerevisiae YJM1326 SNR37
    2D structure Publications