Sorry, there was a problem loading sequence from server. Please try again and contact us if the problem persists.

Sus scrofa (pig) ssc-miR-31 URS00000DE5AF_9823

Caution, this is an AI generated summary based on literature. This may have errors, see here for more. Please share your feedback with us.

ssc-mir-31: ssc-mir-31 is a microRNA that is predicted to target four different genes induced by NRF2, namely AKR1C4, AKR1CL1, GGT1, and TXNRD1 [PMC7426424]. It shows a high level of connectivity in networks and interacts specifically with NRF2 activated targets [PMC7426424]. To validate the expression of ssc-mir-31, quantitative stem-loop RT-PCR analysis was performed along with other miRNAs such as ssc-miR-145-5p, ssc-miR-98, and ssc-miR-1839-5p [PMC4934789]. The expression of ssc-mir-31 was consistent with the small RNA sequencing results and was found to be highly expressed in mESCs and somatic stem cells [PMC4934789]. In piPSCs, the expression of ssc-mir-31 was up-regulated compared to pEFs [PMC4934789]. Additionally, changes in lipid-related miRNAs including ssc-mir-31 were identified through deep sequencing analysis [PMC6617047]. The authenticity of miRNA sequencing data was validated by performing RT-qPCR on randomly selected differentially expressed miRNAs including ssc-mir-31 [PMC9622794]. The regulatory orientation and expression patterns of these miRNAs were consistent with their sequencing results [PMC9622794]. Furthermore, differential expression of several miRNAs including ssc-mir-31 was observed at different time points during infection [PMC4759598]. In summary, ssc-mir-31 is a microRNA that targets genes induced by NRF2 and shows high connectivity in networks. It has been validated through quantitative stem-loop RT-qPCR analysis and found to be highly expressed in mESCs and somatic stem cells. In piPSCs, its expression is up-regulated compared to pEFs. Changes in ssc-mir-31 expression have also been observed in lipid-related contexts and during infection. [PMC7426424] [PMC4934789] [PMC6617047] [PMC9622794] [PMC4759598].

Genome locations

Gene Ontology annotations

Sequence

Sequence features are shown above as colored rectangles. Zoom in and click to view details, or Reset

Search for similar sequences
AGGCAAGAUGCUGGCAUAGCUG

Taxonomic tree

View annotations in different species by clicking on species names.

Scroll around to explore the entire tree. Click tree nodes to collapse or expand them. Hover over taxon names to display additional information.

This sequence is found in 9 other species

  1. Callithrix jacchus (white-tufted-ear marmoset) cja-miR-31
  2. Cricetulus griseus cgr-miR-31-5p
  3. Daubentonia madagascariensis (aye-aye) dma-miR-31
  4. Microcebus murinus (gray mouse lemur) mmr-miR-31
  5. Mus musculus (house mouse) mmu-miR-31-5p
  6. Nomascus leucogenys nle-miR-31
  7. Otolemur garnettii oga-miR-31
  8. Papio hamadryas pha-miR-31
  9. Rattus norvegicus rno-miR-31a-5p
Publications