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Planktothrix rubescens 16S ribosomal RNA secondary structure diagram

Planktothrix rubescens 16S ribosomal RNA URS000002EF99_59512

Automated summary: This rRNA sequence is 1,369 nucleotides long and is found in Planktothrix rubescens. Annotated by 3 databases (RefSeq, ENA, SILVA). Described in 2 papers. Has a conserved secondary structure or a structured region. Matches 1 Rfam family (SSU_rRNA_bacteria, RF00177).

Genome locations

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This sequence is found in {{ locations.length }} genome :

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    Gene Ontology annotations

    Sequence

    Sequence features are shown above as colored rectangles. Zoom in and click to view details, or Reset

    GAAUCUUCGGGAUUUAGUGGCGGACGGGUGAGUAACACGUAAGAACCUGCCUCUAGGACGGGGACAACAGUUGGAAACGACUGCUAAACCCGGAUGAGCCGAAAGGUAAAAGAUUAAUCGCCUAGAGAGGGGCUUGCGUCUGAUUAGCUAGUUGGUGAGGUAAGAGCCCACCAAGGCGACGAUCAGUAGCUGGUCUGAGAGGAUGAUCAGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUUUUCCGCAAUGGGCGAAAGCUGACGGAGCAAGACCGCGUGGGGGAGGAAGGUUCUUGGAUUGUCAACCCCUUUUCUCAGGGAAGAACACAAUGACGGUACCUGAGGAAAAAGCAUCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGGGGAUGCAAGCGUUAUCCGGAAUGAUUGGGCGUAAAGAGUCCGUAGGUAGUCAUCCAAGUCUGCUGUUAAAGAGCGAGGCUUAACCUCGUAAAGGCAGUGGAAACUGGAAGACUAGAGUGUAGUAGGGGCAGAGGGAAUUCCUGGUGUAGCGGUGAAAUGCGUAGAGAUCAGGAAGAACACCGGUGGCGAAGGCGCUCUGCUGGGCUAUAACUGACACUGAGGGACGAAAGCUAGGGGAGCGAAUGGGAUUAGAUACCCCAGUAGUCCUAGCGGUAAACGAUGGAAACUAGGUGUGGCCUGUAUCGACCCGGGCCGUGCCGAAGCAAACGCGUUAAGUUUCCCGCCUGGGGAGUACGCACGCAAGUGUGAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGUAUGUGGUUUAAUUCGAUGCAACGCGAAGAACCUUACCAGGACUUGACAUCUCUGGAAUCUCCUUGAAAGGGGAGAGUGCCGUAAGGAACCAGAAGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUCGUCGUUAGUUGCCAUCAUUAAGUUGGGAACUCUAGCGAGACUGCCGGUGACAAACCGGAGGAAGGUGAGGAUGACGUCAAGUCAGCAUGGCCCUUACGUCCUGGGCGACACACGUACUACAAUGCGAGGGACAGAGAGCAGCCAACCCGCGAGGGAGAGCGAAUCUCAUAAACCCUGGCACAGUUCAGAUUGCAGGCUGCAACUCGCCUGCAUGAAGGAGGAAUCGCUAGUAAUCGCAGGUCAGCAUACUGCGGUGAAUCCGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGAAGUGAGCCACGCCCGAAGUCAUUACUCUAACCCGAAAGGGAGGAGGGUGCCGAAGGCGGGGUUGAUGACUGGGGU

    Taxonomic tree

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    This sequence is found in 4 other species

    1. Planktothrix agardhii CCAP 1459/16 bacterial SSU rRNA
    2. Planktothrix agardhii CCAP 1459/23 bacterial SSU rRNA
    3. Planktothrix agardhii NIVA-CYA 133 bacterial SSU rRNA
    4. Planktothrix rubescens NIVA-CYA 55 bacterial SSU rRNA
    5. Planktothrix rubescens NIVA-CYA 87 bacterial SSU rRNA
    2D structure New