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Halococcus sediminicola 16S ribosomal RNA secondary structure diagram

Halococcus sediminicola 16S ribosomal RNA URS000002DC9B_1264579

Automated summary: This rRNA sequence is 1,406 nucleotides long and is found in Halococcus sediminicola. Annotated by 4 databases (SILVA, RefSeq, ENA, Greengenes). Described in 3 papers. Has a conserved secondary structure or a structured region. Matches 1 Rfam family (SSU_rRNA_archaea, RF01959). Halococcus sediminicola 16S ribosomal RNA sequence is a product of rrn gene.

Genome locations

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This sequence is found in {{ locations.length }} genome :

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    Gene Ontology annotations

    Sequence

    Sequence features are shown above as colored rectangles. Zoom in and click to view details, or Reset

    GAGGCUAUUGCUAUCGGGGUCCGAUUCAGCCAUGCUAGUUGUACGGGUUUAGACCCGUAGCAAAUAGCUCCGUAACACGUGGUCAAACUACCCUCUGGACCGGAAUACCCUCGGGAAACUGAGGUUAAUUCCGAAUACUACUUUCAUGUUGGAACACAGAAAGUCGGAAACGGUCCGCCGCCGGAGGACGUGACUGCGGCCGAUUAGGUAGAUGGUGGGGUAACGGCCCACCAUGCCGAUAAUCGGUACGGGUUGUGAGAGCAAGAACCCGGAGACGGUAUCUGAGACAAGAUACCGGGCCCUACGGGGCGCAGCAGGCGCGAAACCUUUACACUGCACGCCAGUGCGAUAAGGGGACCCCGAGUGCGAGGGCAUACAGUCCUCGCUUUUCGUGACCGUAAGGUGGUCACAGAAUAAGAGCUGGGCAAGACCGGUGCCAGCCGCCGCGGUAAUACCGGCAGCUCGAGUGAUAGCCACUUUUAUUGGGCCUAAAGCGUCCGUAGCCGGCCGAACAGGUCCGUCGGGAAAUCCACUCGCUCAACGAGUGGACGUCCGGCGGAAACCAGUCGGCUUGGGGCCGGGAGACCAGAGAGGUACGUCCGGGGUAGGAGUGAAAUCCUGUAAUCCUGGACGGACCGCCGGUAGCGAAAGCGUCUCUGGAGAACGGACCCGACGGUGAGGGACGAAAGCUUGGGUCUCGAACCGGAUUAGAUACCCGGGUAGUCCAAGCCGUAAACGAUGCUCGCUAGGUGUGGCGUUGGCUACGAGCCAGCGCUGUGCCGUAGGGAAGCCGAGAAGCGAGCCGCCUGGGAAGUACGUCCGCAAGGAUGAAACUUAAAGGAAUUGGCGGGGGAGCACUACAACCGGAGGAGCCUGCGGUUUAAUUGGACUCAACGCCGGACAUCUCACCGGCACCGACAGUGUGCAGUGACAGUCAGUCUGAUGGGCUUACUUGAGCCACUGAGAGGAGGUGCAUGGCCGCCGUCAGCUCGUACCGUGAGGCGUCCUGUUAAGUCAGGCAACGAGCGAGACCCGCGUCCCUAAUUGCCAGCAGCAGCCUUGUGCUGGCUGGGUACAUUAGGGAGACUGCCGUCGCUAAGACGGAGGAAGGAACGGGCAACGGUAGGUCAGUAUGCCCCGAAUGUGCCGGGCGACACGCGGGCUACAAUGGCCGAGACAGUGGGACGCUACCCCGAGAGGGGACGCUAAUCUCCUAACCUCGGUCGUAGUUCGGAUUGCGGGUUGAAACCCACCCGCAUGAAGCUGGAUUCGGUAGUAAUCGCGUCUCAGAAGGGCGCGGUGAAUACGUCCCUGCUCCUUGCACACACCGCCCGUCAAAUCACCCGAGUGAGGUCCGGAUGAGGCCGGCGCAACGCCGGUCGAAUCUGGGCUUCGCAAGGGGGAUU

    Taxonomic tree

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    2D structure New