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Cycloclasticus zancles 78-ME bacterial LSU rRNA secondary structure diagram

Cycloclasticus zancles 78-ME bacterial LSU rRNA URS0000027E05_1198232

Automated summary: This rRNA sequence is 2,888 nucleotides long and is found in Cycloclasticus zancles 78-ME. Annotated by 2 databases (SILVA, ENA). Has a conserved secondary structure or a structured region. Matches 1 Rfam family (LSU_rRNA_bacteria, RF02541).

Genome locations

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This sequence is found in {{ locations.length }} genome :

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  • {{ location.chromosome }} {{ location.start | number }} {{ location.end | number }} {{ location.strand == "1" ? "forward" : "reverse" }} {{ location.ensembl_division.name.replace('EnsemblVertebrates', 'Ensembl') }} UCSC 100% {{ location.identity * 100 | number:0 }}%

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    Gene Ontology annotations

    Sequence

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    UCAAGUGAAUAAGUGCAUACGGUGGAUGCCUAGGCGACAAGAGGCGAUGAAGGACGUUGUAGCUUGCGAUAAGCUUCGGGGAGGUAGCAAACAACCUUUGAUCCGAAGAUUUCCGAAUGGGGAAACCCGGCCAUUUUUAAUGGUCACCUUAUACUGAAUACAUAGGUAUAAGGAGCGAACCUGGGGAACUGAAACAUCUAAGUACCCAGAGGAAAAGAAAUCAACCGAGAUUCCCUUAGUAGCGGCGAGCGAACGGGGACCAGCCCUUAAGCUCUAUUUGUGUUAGUGGAACAUACUGGAAAGUUUGGCCAUAGUGGGUGAUAGCCCCGUACACGAAAAUGCAUUUAGAGUGAAAUCGAGUAGAUCGGGACACGUGAUAUCCUGAUUGAACAUGGGGGGACCAUCCUCCAAGGCUAAAUACUACUUGUCGACCGAUAGUGAACCAGUACCGUGAGGGAAAGGCGAAAAGAACCCCUGUUAGGGGAGUGAAAUAGAUCCUGAAACCGUAUGCAUACAAGCAGUGGGAGCACCUUCGUGGUGUGACUGCGUACCUUUUGUAUAAUGGGUCAGCGACUUACUUUCAGUGGCAAGCUUAACCGUUAGGGGAGGCGUAGGGAAACCGAGUCUUAAUAGGGCGUCAUAGUCGCUGGGAGUAGACCCGAAACCGGGCGAUCUAUCCAUGGCCAGGGUGAAGGUGAGGUAAAACUUACUGGAGGCCCGAACCCACUUAUGUUGAAAAAUGAGGGGAUGAGCUGUGGAUCGGAGUGAAAGGCUAAACAAGCCCGGAGAUAGCUGGUUCUCCUCGAAAUCUAUUUAGGUAGAGCCUCGCAUAUCACUGUUGGGGGUAGAGCACUGUUACGGCUAGGGGGUCAUCCCGACUUACCAACCCGUUGCAAACUCCGAAUACCAACAAGUGCAAUUGCGGGAGACACACGGCGGGUGAUAAGGUCCGUUGUGGAAAGGGAAACAGCCCAGACCGUCAGCUAAGGUCCCAAAAUGAUACUCAGUGGAAAACGAUGUGAAAAGGCACAGACAGCCAGGAGGUUGGCUUAGAAGCAGCCAUCCUUUAAAGAAAGCGUAAUAGCUCACUGGUCAAGUCGGUUUGCGCGGAAGAUUUAUCGGGGCUUAAGUAUCAUACCGAAGCUACGGAUGCGUGUUUACACGCAUGGUAGAGGAGCGUUCUGUACGCCUGUGAAGGUGAAUCGAGAGGUUUGCUGGAGGUAUCAGAAGUGCGAAUGCUGACAUGAGUAACGAUAAUGGGGGUGAAAAACCCCCACGCCGAAAACCCAAGGUUUCCUGCGCAAUGCUAAUCAGCGCAGGGUUAGUCGGAACCUAAGGCGAGGCCGAAAGGCGUAGUCGAUGGACAACAGGUUAAUAUUCCUGUACCGCGUAUAACUGCGAUGGGGAGACGGAGAAGGCUAGAUCAGCAUACUGUUGGAUAUGUAUGUUUAAGCAUGUAGGGCGAGUUCUUAGGUAAAUCCGGGAACUCAUUAAACCUGAGAUGUGAUGUCGAGGACUCUACGGAGUCCGGAGUGAUUGAUGCCAUGCUUCCAAGAAAAUCCUCUAAGCUUCAGGUUAUAGGCGUCCGUACCCCAAACCGACACAGGUGGGUGGGAUGAGAAUUCUAAGGCGCUUGAGAGAACUCUGGUGAAGGAACUAGGCAAAAUGGUACCGUAACUUCGGGAGAAGGUACGCCCUCUAGGUGACGCGACUUGCUCGUUGAGCUCAAGAGGGUUGCAAUAAAAUGGUGGCUGCGACUGUUUACUAAAAACAUAGCACUCUGCAAACUCGUAAGAGGAAGUAUAGGGUGUGACGCCUGCCCGGUGCCGGAAGGUUAAUUGAUGGGGUUAUCUUCGGAGAAGCUCUUGAUCGAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCUGCACGAAUGGCGUAACGACGGCCACACUGUCUCCACCAGAGACUCAGUGAAAUUGAAAUAGCUGUUAAGAUGCAGUUUACCCGCGGCUAGACGGAAAGACCCCGUGAACCUUUACUAUAGCUUUGCACUGAACUUUGAACCUAUUUGUGUAGGAUAGGUGGGAGACUUUGAAGCAGGAACGCCAGUUCUUGUGGAGUCAUCCUUGAAAUACCACCCUGGUAUGUUUGGAGUUCUAACCCAGGUCCGUUAUCCGGAUCGGGGACAGUGUAUGGUGGGUAGUUUGACUGGGGCGGUCUCCUCCCAAAGAGUAACGGAGGAGCACGAAGGUACCCUAAGGACGGUCGGAAAUCGUCCGCUUAGUGCAAUGGCAUAAGGGUGCUUGACUGCGAGAUAGACACAUCGAGCAGGUACGAAAGUAGGUCAUAGUGAUCCGGUGGUUCUGUAUGGAAGGGCCAUCGCUCAACGGAUAAAAGGUACUCCGGGGAUAACAGGCUGAUACCGCCCAAGAGUUCAUAUCGACGGCGGUGUUUGGCACCUCGAUGUCGGCUCAUCACAUCCUGGGGCUGUAGCCGGUCCCAAGGGUAUGGCUGUUCGCCAUUUAAAGUGGUACGCGAGCUGGGUUUAGAACGUCGUGAGACAGUUCGGUCCCUAUCUGCCGUGGGCGUUUGAGAAUUGAGGAAAGCUGCUUCUAGUACGAGAGGACCGAAGUGGACGAACCUCUGGUGUUCCGGUUGUCACGCCAGUGGCAUUGCCGGGUAGCUACGUUCGGACGGGAUAAGCGCUGAAAGCAUCUAAGCGCGAAGCCUCUUCCAAGAUUAAUUCUCACUGAUUCUUUAAGAAUCCUGAAGGGCCCUUGAAGACUACAAGGUUGAUAGGCAUGGUGUGGAAGCGCAGUAAUGUGUGAAGCUAACAUGUACUAAUUGCCCGUGAGGCUUGACCAU

    Taxonomic tree

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    This sequence is found in 2 other species

    1. Cycloclasticus pugetii PS-1 bacterial LSU rRNA
    2. Cycloclasticus zancles 23S ribosomal RNA
    2D structure