Sorry, there was a problem loading sequence from server. Please try again and contact us if the problem persists.
Cupidesulfovibrio oxamicus 16S ribosomal RNA secondary structure diagram

Cupidesulfovibrio oxamicus 16S ribosomal RNA URS00000266BF_32016

Automated summary: This rRNA sequence is 1,513 nucleotides long and is found in Cupidesulfovibrio oxamicus. Annotated by 3 databases (ENA, SILVA, RefSeq). Described in 2 papers. Has a conserved secondary structure or a structured region. Matches 1 Rfam family (SSU_rRNA_bacteria, RF00177).

Genome locations

Sorry, there was a problem loading genome locations from server. Please try again and contact us if the problem persists.

This sequence is found in {{ locations.length }} genome :

Go to location Chromosome Start End Strand Ensembl UCSC Sequence identity
Loading genome locations...
Failed to load data from server
No genome locations known
loading browser
  • Can't view - strange chromosome name
  • {{ location.chromosome }} {{ location.start | number }} {{ location.end | number }} {{ location.strand == "1" ? "forward" : "reverse" }} {{ location.ensembl_division.name.replace('EnsemblVertebrates', 'Ensembl') }} UCSC 100% {{ location.identity * 100 | number:0 }}%

    No genome locations found for this sequence. Learn more →

    Gene Ontology annotations

    Sequence

    Sequence features are shown above as colored rectangles. Zoom in and click to view details, or Reset

    Search for similar sequences
    CAGAGUUUGAUCCUGGCUCAGAUUGAACGCUGGCGGCGUGCCUAACACAUGCAAGUCGUGCGUGAAAAGGCUUCGGCCUGAGUAAAGCGGCGCACGGGUGAGUAACGCGUGGAUGAUCUGCCCAUAAGUUGGGAAUAACGGCUGGAAACGGUCGCUAAUACCGAAUACGCUCCGAUUUCACAGUUCGGGGGAAAGGUGGCCUCUACUUGUAAGCUACCGCUCAUGGAUGAGUCCGCGUCCCAUUAGCUUGUUGGCGGGGUAAUGGCCCACCAAGGCGACGAUGGGUAGCCGACCUGAGAGGGUGAUCGGCCACACUGGGACUGGAACACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCGCAAUGGGCGAAAGCCUGACGCAGCGACGCCGCGUGAGGGAUGAAGGCCUUCGGGUCGUAAACCUCUGUCAGGAGGGAAGAACCGCCAUGGUGCUAAUCAGCCAUGGUCUGACGGUACCUCCAAAGGAAGCACCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGUGCAAGCGUUAAUCGGAAUCACUGGGCGUAAAGCGCACGUAGGCUGUUUGGUAAGUCAGGGGUGAAAUCCCGCGGCUCAACCGCGGAAUUGCCCUUGAUACUGCUGGACUUGAGUUCGGGAGAGGGUGGCGGAAUUCCAGGUGUAGGAGUGAAAUCCGUAGAUAUCUGGAGGAACAUCAGUGGCGAAGGCGGCCACCUGGACCGAUACUGACGCUGAGGUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCUGUAAACGAUGGAUGCUAGGUGUCGGGGCCUUGAGCUUCGGUGCCGCAGCUAACGCGUUAAGCAUCCCGCCUGGGGAGUACGGUCGCAAGGCUGAAACUCAAAGAAAUUGACGGGGGCCCGCACAAGCGGUGGAGUAUGUGGUUUAAUUCGAUGCAACGCGAAGAACCUUACCCAGGCUUGACAUCCGGGAAACCCUCCCGAAAAGGAGGGGUGCUCUUCGGAGAAUCCCGAGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGCCGUGAGGUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCCUGUUCAUAGUUGCCACCAGGUAAUGCUGGGCACUCUAUGGAGACCGCCCCGGUUAACGGGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGGCCCUUACGCCUGGGGCUACACACGUACUACAAUGGCGCACACAAAGGGCAGCGAUACCGUGAGGUGGAGCCAAUCCCAAAAAAUGCGUCCCAGUCCGGAUUGCAGUCUGCAACUCGACUGCAUGAAGUUGGAAUCGCUAGUAAUUCGAGAUCAGCAUGCUCGGGUGAAUGCGUUCCCGGGCCUUGUACACACCGCCCGUCACACCACGAAAGUCGGUUUUACCCGAUACCGGUGAGCCAACCGCAAGGAGGCAGCCGUCUACGGUAGGGCCGAUGAUUGGGGUGAAGUCGUAACAAGGUAACCGUA

    Taxonomic tree

    View annotations in different species by clicking on species names.

    Scroll around to explore the entire tree. Click tree nodes to collapse or expand them. Hover over taxon names to display additional information.

    2D structure