Automated summary: This rRNA sequence is 1,462 nucleotides long and is found in Alicyclobacillus mali (ex Roth et al. 2021). Annotated by 4 databases (SILVA, ENA, Greengenes, RefSeq). Has a conserved secondary structure or a structured region. Matches 1 Rfam family (SSU_rRNA_bacteria, RF00177). Alicyclobacillus mali (ex Roth et al. 2021) 16S ribosomal RNA sequence is a product of rrn gene.
This sequence is found in {{ locations.length }} genome
| Go to location | Chromosome | Start | End | Strand | Ensembl | UCSC | Sequence identity | |
|---|---|---|---|---|---|---|---|---|
| Loading genome locations... | ||||||||
| Failed to load data from server | ||||||||
| No genome locations known | ||||||||
|
loading browser
|
{{ location.chromosome }} | {{ location.start | number }} | {{ location.end | number }} | {{ location.strand == "1" ? "forward" : "reverse" }} | {{ location.ensembl_division.name.replace('EnsemblVertebrates', 'Ensembl') }} | UCSC | 100% | {{ location.identity * 100 | number:0 }}% |
No genome locations found for this sequence. Learn more →
Contains ambiguity characters: 2 N IUPAC notation
Sequence features are shown above as colored rectangles. Zoom in and click to view details, or Reset
GACGAACGCUGGCGGCGUGCCUAAUACAUGCAAGUCGAGCGGGUCUCUUCGGAGGCCAGCGGCGGACGGGUGAGGAACACGUGGGUAAUCUGCCUUUCAGGCCGGAAUAACGCCCGGAAACGGGCGCUAAUGCCGGAUACGCCCGCGAGGAGGCAUCUUCUUGCGGGGGAAGGCCCAACUGGGCCGCUGAGAGAGGAGCCCGCGGCGCAUUAGCUNGUUGGCGGGGUAACGGCCCACCAAGGCGACGAUGCGUAGCCGACCUGAGAGGGUGACCGGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUAGGGAAUCUUCCGCAAUGGGCGCAAGCCUGACGGAGCAACGCCGCGUGAGCGAAGAAGGCCUUCGGGUUGUAAAGCUCUGUUGCUCGGGGAGAGCGGCAUGGGGGAUGGAAAGCCCCAUGCGAGACGGUACCGAGUGAGGAAGCCCCGGCUAACUACGUGCCAGCAGCCGCGGUAAAACGUAGGGGGCGAGCGUUGUCCGGAAUCACUGGGCGUAAAGGGUGCGUAGGCGGUCGAGCAAGUCUGGAGUGAAAGUCCAUGGCUCAACCAUGGGAUGGCUUUGGAAACUGCUUGACUUGAGUGCUGGAGAGGCAAGGGGAAUUCCACGUGUAGCGGUGAAAUGCGUAGAGAUGUGGAGGAAUACCAGUGGCGAAGGCGCCUUGCUGGACAGUGACUGACGCUGAGGCACGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGAGUGCUAGGUGUUGGGGGGACACACCCCAGUGCCGAAGGAAACCCAAUAAGCACUCCGCCUGGGGNGUACGGUCGCAAGACUGAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCAGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGAAGAACCUUACCAGGGCUUGACAUCCCUCUGACACCCUCAGAGAUGAGGGGUCCCUUCGGGGCAGAGGAGACAGGUGGUGCAUGGUUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUCAGUCCCGCAACGAGCGCAACCCUUGACCUGUGUUACCAGCGCGUUGAGGCGGGGACUCACAGGUGACUGCCGGCGUAAGUCGGAGGAAGGCGGGGAUGACGUCAAAUCAUCAUGCCCCUGAUGUCCUGGGCUACACACGUGCUACAAUGGGCGGAACAAAGGGAGGCGAAGCCGCGAGGCGGAGCGAAACCCAAAAAGCCGCUCGUAGUUCGGAUUGCAGGCUGCAACUCGCCUGCAUGAAGCCGGAAUUGCUAGUAAUCGCGGAUCAGCAUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCACGAGAGUCGGCAACACCCGAAGUCGGUGAGGUAACCCCUCUGGGGAGCCAGCCGCCGAAGGUGGGGUCGAUGAUUGGGGUGAAG
View annotations in different species by clicking on species names.
Scroll around to explore the entire tree. Click tree nodes to collapse or expand them. Hover over taxon names to display additional information.