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Homo sapiens (human) long intergenic non-protein coding RNA 1993 (LINC01993) URS0000294D70_9606

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LINC01993: LINC01993 is a long non-coding RNA (lncRNA) that is highly expressed in gastric cancer (GC) tissue [PMC9101833]. It is one of five lncRNAs, along with CATIP-AS2, TTC3-AS1, LINC01564, and LINC02015, that are found to be highly expressed in GC tissue [PMC9101833]. These five lncRNAs were also identified in the overlapping region of cancer samples compared to normal samples [PMC9101833]. Furthermore, these lncRNAs were found to be upregulated in various types of cancers including GC [PMC8260299]. In a study using the HCMD-EXP00440 database, LINC01993 was identified as one of the five significantly upregulated lncRNAs in metastatic tumor samples compared to primary tumor samples [PMC8260299]. Additionally, 11 specific transcription factors (TFs) were also found to be significantly upregulated in metastatic tumor samples [PMC8260299]. Interestingly, no binding sites for the transcription factor POU2F1 were found in the promoter regions of CATIP-AS2, LINC01993, and LINC02015 [PMC8260299]. In summary, LINC01993 is a highly expressed lncRNA in GC tissue and is associated with metastatic tumors. It is part of a group of five lncRNAs that are upregulated in various types of cancers. Additionally, specific TFs are also upregulated along with these lncRNAs. However, POU2F1 does not appear to directly target CATIP-AS2 or LINC01993.

Genome locations

Gene Ontology annotations

Sequence

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GUUACUGGAAAUGAGGAGAGCCUCCCAGGUCCCAGCAGAGCUGCUGCUGGUGCCUCCCACUGUGGGCUCCACAGAGGCAGAGGAUGAGGGAGCCACUGAUACCUCCCUGUAAGGCAGCCUCCCUGAGCGAGCAGGAGCAGGUCAGGGGUGAGUGUGGAAUGAUGACAGCCCAGGGCAUCCUAGGCCCCCGGGGCAAGAGCAAGCUCCCUGUGCUUCCUGACCCCCGCCUCAUUUGCAGAUACAUGUGCUCAUGUCGGGAGAUACCUGGAGUCAUCUCAACUCCUGUCCCCCAUUCCGCAGGUCCACAAGUCACCAGGUUCCAUUCCCCUUCCCCUCCACAUAUCUCAGAGCUGUCACAGACUCUCCAUGCCCCAUUUCAGGGGUCUUGGCCCAGGCCUUGUCAUGCCUUAUCUGGACCAAGAGCAAUGGUCCCCAACCAGCUCCACCCAGGUACCCCCUGCCCCGCCCAUGUCCCCCACAGUUGCACCAUGCCUGCUGGCACCUGCCCUCUCUUCACUGGUGCUCCAGCAGCUGCAGAGGCAGGGCUGAACCCUGGGCCCGCUCUCAGGGCCCCCACCUCCUGCUCAUCCUCCACAUGGCCCAAGCCCUUCAUGACUGUUUGCCUCUUGCCCACAUCUUCCAUGUUGACGUCGCCUGGGACUGGAGGAUGCAUCAGAGCACGGAUCCUUGAGCCAGCUUAAAAACGGUGUGUGAGGCCGGGCACGGUGGCUCACGCCUGUAAUCCCAGCACUUUGGGAGGCCGAGGGUCUACAGGAGUUAGUGCAUGCAGUGUGCUUAGGACAGGGCCUGCUGGAGGAAUGUUUACUACUACUAUUAAUGACUGGUACCCGGGGCUAGUGAUCCAGCAUUUCCUGCCUAGCGCCUUGUCCAUUCCAUGAGAACCGGCCCUCCUCAGCCUCACCAGGGACAUCGACAUGUCUGACCCCCUGCAGCCUGCAGGGGGAGGACACGGAGACCCUGAGCAGGCAGCGACUUCUGGAGUUCAACAGCCCCCUAGGGCAGACCUGUGGAUGCAAAGCCGGGCUCCAGGUACGCAGUGCCCUUGGGGGCCGCCAGGUGCUGGCAGCAGGGCCACGGGGACCUGGGACUGAGCCCUCUCUGCCUCCAGGAAAAAGCAAAAUGGGAUCAUGGUCCCAGGCGUCCAUUCGAGGUCCUCUCCCCUUGGCAGGAGACGAAGGACACUGAACCCAGCACUCAGCAUGGGCUGGCAAACCUAAUCAGUGCCCAUGGAUUAUGUUUGCCAUCCACUGACUGGUGGACGGAUUGAGGACCUUGGAGUUAUCUUCCUGAAUCUUCCCUCCUUGAUGGCAACUCACCUCCGCUCACCAAGGGGUCCAGGAAGGCACCUGACUCUCAGGACCGCUGGCGUCUUGGCCAGCCUGGGAGAGAAAUUCAUCUGGCUUAUGGCACAGGGACAGAAGCAGGCCGGCUGAGGACAAGGUAACAGAAGGGCUAGGGCUUUUAGAAGACAAAGCUUCCUUCACGGAUGCAGAAGGAGAAUGCUGUUUCUCUGCGCUGGGCAACCUGGGUUUGAAUCCCAUCUCUGGGAUAAGUGUGCAGGGCGCACAGCAGGUGUUCGGCACACAGAGCCCUUACUGAAGAUACUGCUCAACAAGGCAGGGUCUGCCUGGCGCUGGCUUCAGGCCCUUGGCAGGGGCUGGGCAGCCACUCUUGCCCAUGCCCUGGUGGCCCCGAGAUGCCAGCACUCCUCUGGGUGGUUGGGGAACCCACCCAGGGUGGAGGAGGUGGGCAAGGCCUGGGAUUCCACAUCUCCAGGGCAGCAGACCCCACGGUCUCCAGGGAUCUUGUCUGUGCCCAAACUCCUGAGACUUCCCUGUCCUUUCCCACAAGGGCCCUGGCUCUGGUGGCUGCAGAAGUGGGAGGAGGGGAUGUGGGGGAGUCUGGGGAAGGCCACCUUCCAUGACGCUCUGCCAAGCCAGGAGGAGCGAAGGAAUAACCUGGUCCCCGUGCUGGACCCUGGACUCCAGGAAGCAGAGCCCACAGCCGGCUCAGCCUUGGGUCCCCUGCCUCUGUGGAGCUGGCCCUACCCCAGAUGGCCACUGUGCCUGAGGCCCGGCAUCUGACCCUCUGUCCUCCCUGCCGAGGGGCCAGAACAGAGGCCCCGGCAACAGGCAAGGCGCAGUGCACGGAGCUGACCCCGUGCCUCGGUCCAGGCCUAGCAACAGGAAGUGAGAGGCCAAUGCCGGUAAACGAGAUCCGAAAGAUUAGAGGCCUCGCUGCCGCCCCAAGUUAGAGGACAAGUUCCUGGAAGGAGGAGGAAGCUGCCGCAGUAAAUAACGCCAGACCCCAGCGUCCCAGCUGUCAGCAGCCAGUGCGGCCGCAGGCUGAUAUGGGGUUUCACUAUGUUGACCAGACUGGUCUCGAACUGCUGACCUUGUGAUCCGCCCGCCUUGGACUCUCAAAGUGCUGGGAUUGAAGGCAUGAGCCACUGCACCCAGCCCUGGGGUGAAAUCUUUGCAACGCACAGAACCCGCAAGGAUCAGUAUGCUUGCACAUACCAACCAGCCUGACCAGUCAAUGAGAAAAGACCAGAACAUGCUCUUCACAAAGAGGAAUUCAAACGGCUAAAACAUAAGAAAAGGGGCUGGGCGCGGUGGCUCACGCCUGUAAUCCCAGCACUUUGGGAGGCCAAGACGGGUGUAUCACGAGGUCAGGAGAUCGAGACCAUCCUGGCUAACACGGUGAAACCCCGUCUCUACUAAAAAUACAAGAAAAAUUAGCCGGGCAUGGUGGCGGGCGCCUGUGGUCCCAGCUACUCGGGAGGCUGAGGCAGGAGAAUGGUGUGAACUUGGGAGGCGGAGCUUGCAGUGAGCCGAGAUCGCGCCACUGCACUCCAGCCUGGGCGAUAGAGCGAGACUCCGUCUCAAAAAAUAAAUAAAUAAAUAAAUAAAU

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