Sorry, there was a problem loading sequence from server. Please try again and contact us if the problem persists.
Populus trichocarpa miR396a stem-loop (ptc-MIR396a) secondary structure diagram

Populus trichocarpa miR396a stem-loop (ptc-MIR396a) URS00007B8C17_3694

Automated summary: This pre miRNA sequence is 123 nucleotides long and is found in Populus trichocarpa. Annotated by 2 databases (miRBase, ENA). Described in 2 papers. Has a conserved secondary structure or a structured region. Matches 1 Rfam family (MIR396, RF00648). Populus trichocarpa miR396a stem-loop (ptc-MIR396a) sequence is a product of MIR396a precurso, MIR396a, ptc-MIR396a precursor, MIR396a precursor genes. Found in the black cottonwood reference genome.

Genome locations

Sorry, there was a problem loading genome locations from server. Please try again and contact us if the problem persists.

This sequence is found in {{ locations.length }} genome :

Go to location Chromosome Start End Strand Ensembl UCSC Sequence identity
Loading genome locations...
Failed to load data from server
No genome locations known
loading browser
  • Can't view - strange chromosome name
  • {{ location.chromosome }} {{ location.start | number }} {{ location.end | number }} {{ location.strand == "1" ? "forward" : "reverse" }} {{'EnsemblVertebrates', 'Ensembl') }} UCSC 100% {{ location.identity * 100 | number:0 }}%

    No genome locations found for this sequence. Learn more →

    Gene Ontology annotations


    Sequence features are shown above as colored rectangles. Zoom in and click to view details, or Reset


    Taxonomic tree

    View annotations in different species by clicking on species names.

    Scroll around to explore the entire tree. Click tree nodes to collapse or expand them. Hover over taxon names to display additional information.

    2D structure New