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Homo sapiens (human) RNA, 18S pre-ribosomal N4 secondary structure diagram

Homo sapiens (human) RNA, 18S pre-ribosomal N4 URS0000704D22_9606

Automated summary: This rRNA sequence is 1,869 nucleotides long and is found in Homo sapiens. Annotated by 8 databases (PDBe, IntAct, RefSeq, ENA, GeneCards, Rfam, SILVA, HGNC). Described in 23 papers. Has a conserved secondary structure or a structured region. Has an experimentally determined 3D structure. Matches 1 Rfam family (SSU_rRNA_eukarya, RF01960). Homo sapiens (human) RNA, 18S pre-ribosomal N4 sequence is a product of RNA18SN3, RNA18SN2, RNA18SN4 genes. Found in the human reference genome.

Interactions 19

According to IntAct, Homo sapiens (human) RNA, 18S pre-ribosomal N4 interacts with:

Interaction id Participant Synonyms
EBI-15183352 URS00001BD443_9606 EBI-15183343 URS00001BD443_9606 snora13
EBI-15183370 URS00002587B6_9606 EBI-15183360 URS00002587B6_9606 snora 40
EBI-15184143 URS00004ACFCF_9606 EBI-15184235 URS00004ACFCF_9606 snora1
EBI-15486970 URS00002E0A2C_9606 EBI-15487001 URS00002E0A2C_9606 snord 21
EBI-15486973 URS0000454FD5_9606 EBI-15487014 URS0000454FD5_9606 snord 25
EBI-15486976 URS000041615F_9606 EBI-15487024 URS000041615F_9606 snord 27
EBI-15486979 URS000015A7CF_9606 EBI-15487028 URS000015A7CF_9606 snord 28
EBI-15487049 URS00000A3335_9606 EBI-15487037 URS00000A3335_9606 snord 45a
EBI-15488498 URS0000361A8E_9606 EBI-15488316 URS0000361A8E_9606 snord 76
EBI-16218199 URS000053962A_9606 EBI-16037563 URS000053962A_9606 snord3a_u3
EBI-16218185 URS000020C605_9606 EBI-16182041 URS000020C605_9606 snord42b_u42b
EBI-16218182 URS00002F8E76_9606 EBI-16185883 URS00002F8E76_9606 snord45b_u45b
EBI-16411649 URS00006BA413_9606 EBI-16411640 URS00006BA413_9606 snord 17
EBI-16411662 URS000062ED01_9606 EBI-16411653 URS000062ED01_9606 snord 110
EBI-26353697 intact:EBI-26452941 40S cytosolic small ribosomal subunit 40s_human-1 EBI-25401791 EBI-26452941 FAU:RACK1:RPSA:RPS2:RPS3:RPS3A:RPS4X:RPS4Y1:RPS4Y2:RPS5:RPS6:RPS7:RPS8:RPS9:RPS10:RPS11:RPS12:RPS13:RPS14:RPS15:RPS15A:RPS16:RPS17:RPS18:RPS19:RPS20:RPS21:RPS23:RPS24:RPS25:RPS26:RPS27:RPS27A:RPS27L:RPS28:RPS29 SSU
EBI-26565183 intact:EBI-26452941 40S cytosolic small ribosomal subunit 40s_human-1 EBI-25401791 EBI-26452941 FAU:RACK1:RPSA:RPS2:RPS3:RPS3A:RPS4X:RPS4Y1:RPS4Y2:RPS5:RPS6:RPS7:RPS8:RPS9:RPS10:RPS11:RPS12:RPS13:RPS14:RPS15:RPS15A:RPS16:RPS17:RPS18:RPS19:RPS20:RPS21:RPS23:RPS24:RPS25:RPS26:RPS27:RPS27A:RPS27L:RPS28:RPS29 SSU
EBI-26597647 P0DTD1-PRO_0000449619 1a-1b EBI-25475847 ORF1ab polyprotein P0DTD1-PRO_0000449619 p0dtd1-pro_0000449619 rep
EBI-25828920 P0DTD1-PRO_0000449619 1a-1b EBI-25475847 ORF1ab polyprotein P0DTD1-PRO_0000449619 p0dtd1-pro_0000449619 rep
EBI-26597393 P63244 B3KTJ0 Cell proliferation-inducing gene 21 protein D3DWS0 EBI-2559282 EBI-296739 EBI-923003 GNB2L1 Guanine nucleotide-binding protein subunit beta-2-like 1 Guanine nucleotide-binding protein subunit beta-like protein 12.3 HLC7 Human lung cancer oncogene 7 protein P25388 P63244 P99049 PIG21 Q53HU2 Q5J8M6 Q5VLR4 Q6FH47 RACK1 Receptor for activated C kinase Small ribosomal subunit protein RACK1 rack1_human

Genome locations

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    Gene Ontology annotations

    Sequence

    Sequence features are shown above as colored rectangles. Zoom in and click to view details, or Reset

    UACCUGGUUGAUCCUGCCAGUAGCAUAUGCUUGUCUCAAAGAUUAAGCCAUGCAUGUCUAAGUACGCACGGCCGGUACAGUGAAACUGCGAAUGGCUCAUUAAAUCAGUUAUGGUUCCUUUGGUCGCUCGCUCCUCUCCUACUUGGAUAACUGUGGUAAUUCUAGAGCUAAUACAUGCCGACGGGCGCUGACCCCCUUCGCGGGGGGGAUGCGUGCAUUUAUCAGAUCAAAACCAACCCGGUCAGCCCCUCUCCGGCCCCGGCCGGGGGGCGGGCGCCGGCGGCUUUGGUGACUCUAGAUAACCUCGGGCCGAUCGCACGCCCCCCGUGGCGGCGACGACCCAUUCGAACGUCUGCCCUAUCAACUUUCGAUGGUAGUCGCCGUGCCUACCAUGGUGACCACGGGUGACGGGGAAUCAGGGUUCGAUUCCGGAGAGGGAGCCUGAGAAACGGCUACCACAUCCAAGGAAGGCAGCAGGCGCGCAAAUUACCCACUCCCGACCCGGGGAGGUAGUGACGAAAAAUAACAAUACAGGACUCUUUCGAGGCCCUGUAAUUGGAAUGAGUCCACUUUAAAUCCUUUAACGAGGAUCCAUUGGAGGGCAAGUCUGGUGCCAGCAGCCGCGGUAAUUCCAGCUCCAAUAGCGUAUAUUAAAGUUGCUGCAGUUAAAAAGCUCGUAGUUGGAUCUUGGGAGCGGGCGGGCGGUCCGCCGCGAGGCGAGCCACCGCCCGUCCCCGCCCCUUGCCUCUCGGCGCCCCCUCGAUGCUCUUAGCUGAGUGUCCCGCGGGGCCCGAAGCGUUUACUUUGAAAAAAUUAGAGUGUUCAAAGCAGGCCCGAGCCGCCUGGAUACCGCAGCUAGGAAUAAUGGAAUAGGACCGCGGUUCUAUUUUGUUGGUUUUCGGAACUGAGGCCAUGAUUAAGAGGGACGGCCGGGGGCAUUCGUAUUGCGCCGCUAGAGGUGAAAUUCUUGGACCGGCGCAAGACGGACCAGAGCGAAAGCAUUUGCCAAGAAUGUUUUCAUUAAUCAAGAACGAAAGUCGGAGGUUCGAAGACGAUCAGAUACCGUCGUAGUUCCGACCAUAAACGAUGCCGACCGGCGAUGCGGCGGCGUUAUUCCCAUGACCCGCCGGGCAGCUUCCGGGAAACCAAAGUCUUUGGGUUCCGGGGGGAGUAUGGUUGCAAAGCUGAAACUUAAAGGAAUUGACGGAAGGGCACCACCAGGAGUGGAGCCUGCGGCUUAAUUUGACUCAACACGGGAAACCUCACCCGGCCCGGACACGGACAGGAUUGACAGAUUGAUAGCUCUUUCUCGAUUCCGUGGGUGGUGGUGCAUGGCCGUUCUUAGUUGGUGGAGCGAUUUGUCUGGUUAAUUCCGAUAACGAACGAGACUCUGGCAUGCUAACUAGUUACGCGACCCCCGAGCGGUCGGCGUCCCCCAACUUCUUAGAGGGACAAGUGGCGUUCAGCCACCCGAGAUUGAGCAAUAACAGGUCUGUGAUGCCCUUAGAUGUCCGGGGCUGCACGCGCGCUACACUGACUGGCUCAGCGUGUGCCUACCCUACGCCGGCAGGCGCGGGUAACCCGUUGAACCCCAUUCGUGAUGGGGAUCGGGGAUUGCAAUUAUUCCCCAUGAACGAGGAAUUCCCAGUAAGUGCGGGUCAUAAGCUUGCGUUGAUUAAGUCCCUGCCCUUUGUACACACCGCCCGUCGCUACUACCGAUUGGAUGGUUUAGUGAGGCCCUCGGAUCGGCCCCGCCGGGGUCGGCCCACGGCCCUGGCGGAGCGCUGAGAAGACGGUCGAACUUGACUAUCUAGAGGAAGUAAAAGUCGUAACAAGGUUUCCGUAGGUGAACCUGCGGAAGGAUCAUUA

    Taxonomic tree

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    This sequence is found in 4 other species

    1. Gorilla gorilla SSU rRNA
    2. Oryctolagus cuniculus rRNA from Oryctolagus cuniculus (PDB 7JQB, chain A)
    2D structure New