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Zea mays (maize) zma-miR390b-5p URS00005C2DB4_4577

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zma-miR390a-5p: Zma-mir390a-5p is a novel-miR-39 that targets Zm00001d052147, a gene involved in regulating pericarp thickness [PMC9361504]. The target gene of zma-mir390a-5p is LRR receptor-like serine/threonine-protein kinase FLS2 (Zm00001d002287) [PMC9361504]. Zma-mir390a-5p also targets ZM2G155490_T01 and ZM2G304745_T01, which encode LRR receptor-like kinase [PMC6470939]. Through functional annotations and GO enrichment analysis, zma-mir390a-5p and its target gene GRMZM2G134396 (AMP-deaminase) were found to be involved in regulating seed storability through abscisic acid signaling and purine metabolism [PMC9604548]. High-throughput sequencing identified zma-miR169o-5p, zma-mir390a-5p, zma-miR396c, zma-miR444a, zma-miR397b-p5, and novel-miR4 as potential regulators of seed storability [PMC9604548]. These miRNAs were found to be negatively correlated with seed vigor except for zma-miR444 which was up-regulated with decreasing seed vigor [PMC9604548]. GO enrichment analysis revealed that nine miRNAs including zma-mir390a-5p were down-regulated and four miRNAs were up-regulated in relation to seed storability [PMC9604548]. The target genes of interest for these miRNAs include GRMZM2G165488 (target of zma-miR169o-5p), GRMZM2G134396 (target of zma-mir390a-5p), GRMZM2G133568, GRMZM2G098594, and GRMZM2G105335 (targets of zma-miR396c_L-1), and GRMZM2G399072 (target of zma-miR444) [PMC9604548]. Additionally, zma-mir390a-5p was found to be reduced in B73 + T28, which had enhanced resistance to SCLB compared to B73 without T28 treatment [PMC9964586].

Genome locations

Gene Ontology annotations

Sequence

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AAGCUCAGGAGGGAUAGCGCC

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This sequence is found in 38 other species

  1. Aegilops tauschii ata-miR390-5p
  2. Amborella trichopoda atr-miR390.2
  3. Ananas comosus (pineapple) miR390
  4. Arabidopsis lyrata (lyrate rockcress) aly-miR390a-5p
  5. Arabidopsis thaliana (thale cress) ath-miR390b-5p
  6. Asparagus officinalis (garden asparagus) aof-miR390
  7. Brachypodium distachyon (stiff brome) bdi-miR390a-5p
  8. Brassica napus (rape) bna-miR390c
  9. Brassica rapa (field mustard) bra-miR390-5p
  10. Camelina sativa cas-miR390b
  11. Carica papaya (papaya) cpa-miR390a
  12. Citrus sinensis csi-miR390a-5p
  13. Corchorus capsularis sRNA CCACVL1_11672
  14. Corchorus olitorius aly-miR390a-
  15. Cucumis melo (muskmelon) cme-miR390c
  16. Fragaria vesca subsp. vesca fve-miR390b
  17. Glycine max gma-miR390f
  18. Gossypium hirsutum ghr-miR390b
  19. Helianthus annuus (common sunflower) ath-miR390a-5p
  20. Helianthus exilis hex-miR390a
  21. Linum usitatissimum (flax) lus-miR390d
  22. Lotus japonicus lja-miR390b-5p
  23. Malus domestica mdm-miR390a
  24. Manihot esculenta (cassava) mes-miR390b
  25. Medicago truncatula mtr-miR390
  26. Nicotiana tabacum nta-miR390c
  27. Oryza sativa (Asian cultivated rice) osa-miR390-5p
  28. Oryza sativa Japonica Group microRNA osa-miR390-5p
  29. Physcomitrium patens ppt-miR390b
  30. Picea abies pab-miR390a
  31. Populus tomentosa Pto-miR390b
  32. Populus trichocarpa (black cottonwood) ptc-miR390b
  33. Prunus persica (peach) ppe-miR390
  34. Ricinus communis (castor bean) rco-miR390a
  35. Solanum lycopersicum sly-miR390b-5p
  36. Sorghum bicolor sbi-miR390
  37. Theobroma cacao (cacao) tcc-miR390a
  38. Vitis vinifera (wine grape) vvi-miR390
Publications