Sorry, there was a problem loading sequence from server. Please try again and contact us if the problem persists.

Mus musculus (house mouse) mmu-miR-30a-5p URS000043D1A9_10090

Automated summary: This piRNA sequence is 22 nucleotides long and is found in Mus musculus. Annotated by 6 databases (RefSeq, miRBase, PirBase, ENA, TarBase, LncBase). Described in 38 papers. Mus musculus (house mouse) mmu-miR-30a-5p sequence is a product of miR-30, mmu-miR-30a-5p, miR-30a-5p, mmu-miR-30a, miR-30a, Mir30a genes. Interacts with lncRNAs, such as (). Interacts with protein-coding genes, including 0610007D13Rik, 0610009F02Rik, 0610009M14Rik, 0610010I05Rik, 0610010I17Rik, 0610010O12Rik, 0610012C09Rik, 0610025L15Rik, 0610030A03Rik, 0610033G21Rik.

Genome locations

Sorry, there was a problem loading genome locations from server. Please try again and contact us if the problem persists.

This sequence is found in {{ locations.length }} genome :

Go to location Chromosome Start End Strand Ensembl UCSC Sequence identity
Loading genome locations...
Failed to load data from server
No genome locations known
loading browser
  • Can't view - strange chromosome name
  • {{ location.chromosome }} {{ location.start | number }} {{ location.end | number }} {{ location.strand == "1" ? "forward" : "reverse" }} {{ location.ensembl_division.name.replace('EnsemblVertebrates', 'Ensembl') }} UCSC 100% {{ location.identity * 100 | number:0 }}%

    No genome locations found for this sequence. Learn more →

    Gene Ontology annotations

    Sequence

    Sequence features are shown above as colored rectangles. Zoom in and click to view details, or Reset

    UGUAAACAUCCUCGACUGGAAG

    Taxonomic tree

    View annotations in different species by clicking on species names.

    Scroll around to explore the entire tree. Click tree nodes to collapse or expand them. Hover over taxon names to display additional information.

    This sequence is found in 13 other species

    1. Anolis carolinensis (green anole) aca-miR-30a-5p
    2. Capra hircus miR-30a-5p
    3. Gallus gallus (chicken) gga-miR-30a-5p
    4. Gorilla gorilla ggo-miR-30a-5p
    5. Homo sapiens (human) hsa-miR-30a-5p
    6. Macaca mulatta (Rhesus monkey) mml-miR-30a-5p
    7. Monodelphis domestica mdo-miR-30a-5p
    8. Ovis aries miscellaneous RNA
    9. Pan paniscus ppa-miR-30a-5p
    10. Pan troglodytes (chimpanzee) ptr-miR-30a-5p
    11. Pongo pygmaeus (Bornean orangutan) ppy-miR-30a-5p
    12. Rattus norvegicus rno-miR-30a-5p
    13. Sus scrofa (pig) ssc-miR-30a-5p
    14. Xenopus tropicalis xtr-miR-30a-5p