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Lacticaseibacillus casei 23S ribosomal RNA secondary structure diagram

Lacticaseibacillus casei 23S ribosomal RNA URS000001DF83_1582

Automated summary: This rRNA sequence is 2,918 nucleotides long and is found in Lacticaseibacillus casei. Annotated by 1 database (RefSeq). Described in 2 papers. Has a conserved secondary structure or a structured region. Matches 1 Rfam family (LSU_rRNA_bacteria, RF02541).

Genome locations

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This sequence is found in {{ locations.length }} genome :

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  • {{ location.chromosome }} {{ location.start | number }} {{ location.end | number }} {{ location.strand == "1" ? "forward" : "reverse" }} {{ location.ensembl_division.name.replace('EnsemblVertebrates', 'Ensembl') }} UCSC 100% {{ location.identity * 100 | number:0 }}%

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    Gene Ontology annotations

    Sequence

    Sequence features are shown above as colored rectangles. Zoom in and click to view details, or Reset

    GGUUAAGUUACAAAGGGCGCACGGUGGAUGCCUUGGCACUAGGAGCCGAUGAAGGACGGAACUAAUACCGAUAUGCUUCGGGGAGCUAUAAGUAAGCUUUGAUCCGGAGAUUUCCGAAUGGGGGAACCCAGUACACAUCAGUGUAUUGCUUGUCAGUGAAUACAUAGCUGGCCGGCGGCAGACGCGGGGAACUGAAACAUCUCAGUACCCGCAGGAAGAGAAAGAAAACUCGAUUCCCAUAGUAGCGGCGAGCGAAGUGGGAAGAGCCCAAACCGAGAAGCUUGCUUCUCGGGGUUGUAGGACUGGACAUUGGAGUUACCAAAGUCCGACGUAGUCGAAGUCAGCUGGAAAGCUGCGCCACAGAAGGUGAAAGCCCUGUAAGCGAAACGUCGAACCCUCCGUCCAGGAUCCUGAGUACGGCGGAACACGUGAAAUUCCGUCGGAAUCCGGGAGGACCAUCUCCCAAGGCUAAAUACUCCCUAGUGACCGAUAGUGAACCAGUACCGUGAGGGAAAGGUGAAAAGCACCCCGGAAGGGGAGUGAAACAGUUCCUGAAACCGUGUGCCUACAAUUAGUCAAAGCCCGUUAAUGGGUAAUGGCGUGCCUUUUGUAGAAUGAACCGGCGAGUUACGUUUGCUUGCGAGGUUAAGAUGAAAAGUCGGAGCCGUAGCGAAAGCGAGUCUGAACAGGGCGAAUGAGUAAGCAGAUGUAGACCCGAAACCAAGUGACCUACCCAUGACCAGGUUGAAGGUGUGGUGAAACACACUGGAGGACCGAACCCAUGUAUGUUGAAAAAUGCUGGGAUGAGUUGUGGGUAGCGGUGAAAUUCCAAACGAACUUGGAGAUAGCUGGUUCUCUCCGAAAUAGCUUUAGGGUUAGCCUCGGAGGAUGGAUCAUGGAGGUAGAGCACUGUUUGAACUAGGGGCCCAUCAAGGGUUACUGAAUUCAGAUAAACUCCGAAUACCAUCGAUCUUACUCCGGGAGUCAGACAGUGAGCGAUAAGGUCCAUUGUCGAAAGGGGAACAGCCCAGAUCACCAGUUAAGGUCCCUAAAUUUAUGCUAAGUGGAAAAGGAUGUGGCGUUGCACAGACAACUAGGAUGUUGGCUCAGAAGCAGCCACCAUUUAAAGAGUGCGUAAUAGCUCACUAGUCGAGUGGCACUGCGCCGAAAAUAUACCGGGGCUAAGCAUAAUACCGAAACUGUGGGUGCACCCGUAAGGGUGCGCGGUAGGAGAGCGUUCUAAGGGCGUUGAAGGUCGAUCGUGAGGACGGCUGGAGCGCUUAGAAGUGAGAAUGCCGGCAUGAGUAGCGAAAGAUCAGUGAGAAUCUGAUCCACCGUAUGACUAAGGUUUCCUGGGGAAGGCUCGUCCUCCCAGGGUUAGUCGGGAUCUAAGGCGAGGCCGAGAGGCGUAGUCGAUGACAAGCAGGUUGAGAUUCCUGCACUAGUUUAUUUUGUUUAAGCGAUGGAGGGACGCAGGAGGCUAAGGAAAGCGCACGGCUGGAAAUGUGCGCCCAAGCAGCAAGUCUGACAGCGAGUGAAAUGCUUGCAGUCUUAAGGACAAGCUGUGAUGGGGAGCGAAAUUAUAGUAGCGAAGUUCCUGAUGUCACACUGCCAAGAAAAGCUUCUAGUGAGAAAUAAACUACCCGUACCGCAAACCGACACAGGUAGUCGAGGAGAGUAUCCUCAGGUGAGCGAGCGAACUCUCGUUAAGGAACUCGGCAAAAUGACCCCGUAACUUCGGAAGAAGGGGUGCUGACCGCAAGGUCAGCCGCAGUGAAUAGGCCCAAACAACUGUUUAUCAAAAACACAGGUCUCUGCUAAAUCGUAAGAUGAUGUAUAGGGGCUGACGCCUGCCCGGUGCUGGAAGGUUAAGAGGAUGAGUUAGCGCAAGCGAAGCCCAGAAUUGAAGCCCCAGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCCGCACGAAAGGCGUAAUGAUUUGGGCACUGUCUCAACGAGAGACUCGGUGAAAUUAUAGUACCCGUGAAGAUGCGGGUUACCCGCGACAGGACGGAAAGACCCCAUGGAGCUUUACUGUAGCUUGAUAUUGAGUGUUUGUACCGCUUGUACAGGAUAGGUAGGAGCCGUAGAGAUCGGAACGCUAGUUUCGAUGGAGGCGUUGGUGGGAUACUACCCUAGCUGUAUGAACACUCUAACCCGCGCCACUAAUCGUGGCGGGAGACAGUGUCAGGUAGGCAGUUUGACUGGGGCGGUCGCCUCCUAAAAUGUAACGGAGGCGCCCAAAGGUUCCCUCAGAAUGGUUGGAAAUCAUUCGCAGAGUGUAAAGGUAUAAGGGAGCUUGACUGCGAGACUGACAAGUCGAGCAGGGACGAAAGUCGGGCUUAGUGAUCCGGUGGUUCCGUAUGGAAGGGCCAUCGCUCAACGGAUAAAAGCUACCCUGGGGAUAACAGGCUUAUCUCCCCCAAGAGUCCACAUCGACGGGGAGGUUUGGCACCUCGAUGUCGGCUCAUCGCAUCCUGGGGCUGUAGUCGGUCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGCGGUACGCGAGCUGGGUUCAGAACGUCGUGAGACAGUUCGGUCCCUAUCCGUCGCGGGCGCAGGAAAUUUGAGAGGAGCUGUCCUUAGUACGAGAGGACCGGGAUGGACGUUCCGCUGGUGUACCAGUUGUGCCGCCAGGCGCAUCGCUGGGUAGCUAUGAACGGCAGGGAUAAACGCUGAAAGCAUCUAAGUGUGAAGCCCCCCUCGAGAUGAGAUUUCCCAUUCCUAUAUGGAAGUAAGACCCCUGAGAGAUGAUCAGGUAGAUAGGCUGGAAGUGGAAGUGCAGCGAUGCAUGGAGCGGACCAGUACUAAUCGGUCGAGGACUUAACCAA

    Taxonomic tree

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    This sequence is found in 9 other species

    1. Lacticaseibacillus casei 21/1 bacterial LSU rRNA
    2. Lacticaseibacillus paracasei bacterial LSU rRNA
    3. Lacticaseibacillus paracasei subsp. paracasei Lpp120 bacterial LSU rRNA
    4. Lacticaseibacillus paracasei subsp. paracasei Lpp122 bacterial LSU rRNA
    5. Lacticaseibacillus paracasei subsp. paracasei Lpp17 bacterial LSU rRNA
    6. Lacticaseibacillus paracasei subsp. paracasei Lpp225 bacterial LSU rRNA
    7. Lacticaseibacillus paracasei subsp. paracasei Lpp46 bacterial LSU rRNA
    8. Lacticaseibacillus paracasei subsp. tolerans 23S ribosomal RNA
    9. Lacticaseibacillus paracasei ATCC 334 Bacterial large subunit ribosomal RNA
    10. Lacticaseibacillus paracasei subsp. paracasei 23S ribosomal RNA
    2D structure New