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Homo sapiens (human) long intergenic non-protein coding RNA 1297 (LINC01297) URS000194B0D2_9606

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LINC01297: LINC01297 is a novel long noncoding RNA (lncRNA) that has been found to be differentially expressed in ER+ and ER– breast tumors, with it being the most significantly up-regulated lncRNA in ER-positive tumors [PMC5915100]. It is also included in the regulatory network of Ubiquitin Associated and SH3 Domain Containing B (UBASH3B), a protein involved in the infiltration of immune cell types in the tumor microenvironment (TME) of pancreatic cancer [PMC8699382]. LINC01297 is part of a subnetwork with two other lncRNAs, MIAT and MYLK-AS1, as well as four miRNAs [PMC6974685]. In addition, LINC01297 has been found to be downregulated after EV71 infection [PMC6213062]. The genomic region surrounding LINC01297 also contains the gene POTEM [PMC5428251]. The expression of LINC01297 has been found to be significantly correlated with both LINC01296 and POTEM [PMC5428251]. However, further analysis of the potential regulation between these genes was not conducted [PMC5428251]. Finally, LINC01297 is predicted to target other lncRNAs such as LINC01087 [PMC9493205]. References: - [PMC5915100]: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5915100/ - [PMC8699382]: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8699382/ - [PMC6974685]: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6974685/ - [PMC6213062]: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6213062/ - [PM5428251]: https://www.ncbi.nlm.nih.gov/pmc/articles/PM5428251/ - [PMC9493205]: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9493205/

Genome locations

Gene Ontology annotations

Sequence

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CUACUACUGUGCUACAAGUGGAGCCAUAUAGGGGAAACGAGCAGCCAUCUCAGGAGCAAGGUGUAUGCUGCCUUUGGGGGCUCCAGUCCUUGCCUCAAGGGUCUUAUGUCACUGUGGGCUUCUUGGUUGCCAAGAGGCAGACCAUAGGCCGUCUUGAGAAGGACUUUAUGUUCAAGUGCAGAAAGCAGCCAGGAUUACCACCCUCGGGACUCUGCCUUCUGUGGCCCUGGCCAAACUUAGAAUUUGGCCGUAGACAGGACAAGCUCACUUGGAGUAGCGUGUCUGUAGCUGGGGUCUGUGCAUGCCAGGCAAGGCCAAGCUGGCUCAAAGAGCAACCAGCCACCUCUGCAAGGGUGCACCUAGAGCAGGUGGAGCAGCCACCAGCUCACCCACUCCAGGAAGCCGGGGUAGCCAGGUUCCCAAAGCCUGAGUGGGUGCCACCUAAUGGCUGAAGAAACAGAGGCCUUAGGAAAACCAGAUGGCACUGUGGCCCUACCUUUAUGGUAGAAGAGCUGAUUUAGCCUGACUGGCAGCGUGUGAGGUUGAUGGCUGGUCUGCCUGCUGCUGGCACAUCCGUGCAAAGAUAGCUGGUUGCCCUUUGAGCCAGCUUGCCCUUGCCCAGCAUGCACAAGCCUCAGUGCAACAACUGUGCUGCAAAUGGGGCCAUAUAGAGGAAAGGAGCAGCUGGCUCUGGAACAUGGUGUGCACUCCCUUUGGGCCUUCAGUCCAUGUCUCAUGGGUCGUAUGACACUGCGGGCUUGUUGGUUGCCAAGAGGCAGACCACAGGUCAUCUUGAGGAGGACUUUAUGUUCCAGUCCAGAAAGCAGCCAGUGGUACCACCCAGGGGACUUGUGCUUCUGUGGCCCAGGCCAGACGUAGAAUUUGACAAAGUCAGGACGGUCUCAGUCAGAGCAGCAUGUCGGUCCCCGGGGCCUGUGCAUGCCAGGCAAGGCCAAGCUGGCUUAAAGAGCAAGCAGCCACCUCUGUUAAGGGUGUGCCUGGAGCAGGUGGAGCAGCCACCAACCUCACCCACUGAAAGAAGCAGGGAUGGCCAGGUUCCAACAUCCUGGGUGGCUGCCAGCUGAUGGAGCAGAGGCCUGAGGAAAAGCAGAUGGCACUGCUUUGUGGUGCUCUUCUUUGUCUCUCUUGAUCUUUUUCAGUUAAUGUCUGUUUUAUCAGAGACUAGGAUUGCAAACCCUGCUCUUUUUUGCUUUCCAUUUGCUUGGUAAAUAUUCCUCCAUCCCUUUAUUUUAAGCCUAUGUGUGUCUUUGCACAUGAGAUGGGUCUCCUGAAUACAGGACAACAAUGGGUCUUUACUCUUUAUCCAACUUGCCAGUCUGUGUCUUUUAACUGGGGCAUUUAGCCCAUUUACAUUUAAGUUUAGUAUUGCUACAGGUGAAAUUUAUCCUGUCAUGAUGUUGCUAGCUUUUUAUUUUUCCCAUUAGUUUGCAGUUUCUUUAUAGUGUCAAUGGUCUUUACAAUUCGAUAUGUUUUUGUAGUGGCUGGUACUGGUUUUUCCUUUCUACGUUUAGUGUCUCCUUCAGGAGCUCUUGUAACACAAGAAUGUGGAUUUAUUUCUUGUAAGGUAAAUAUGUGGAUUUAUUUCUUGGGACUGUAUUCUAUGGCCUUUACCCCAAGAAUCAUUACUUUUUAAAAUGCAAUUCAAAUUAGCAUAAAACAUUUACAGCCUAUGGAAAGGCUUGUGGCAUUAGAAUCCUUAUUUAUAGGAUUAUUUUGUGUUUUUUUGAGAUAUGGUCUUUGUCAUCGAGGCAGAAGUGCCGUGGUUUGAUCAUAAUUCACCACAGCCCUGAACUCUUGAGUGCAAGCCAUCCUUUUGCCUUAAUCUCCCAACCAGUUGGAUCUACAAGCAUAAGGCAUCAUGCGUGGCUAAUUUUUUCACGUUUUUUUUUUUUUUUUUUUUUUUUUGUCGAGAUUAUGGUAUCACUAUGUUGCUCUGGCUGAUCUCAAAUGUUUGACCUCAAGGGAUCUUUCUGCCACAGCCUCCUUAAGUGCUAGGAUUAUAUGCAUGAUACACCAUGCCUAUUGUAGAGUAUUACAUUAUUUUCAAAGUCUUAUUGUAAGAGCCAUUUAUUGCCUUUGGCCUAAAUAACUCAAUAUAAUAUCUCUGAAACUUUUUUUUGACAAAUUUUGGGGCAUGAUGAUGAGAGAAGGGGGUUUGAAACUUUCUAAUAAGAGUUAACUUAGAGCCAUUUAAGAAAGGAAAAAACACAAAUUAUCAGAAAAACAAAAGUAAGAUCAAGUGCAAAAGUUCUGUGGCAAAGAUGAUGAGAGUAAAGAAUAUAUGUUUGUGACUCAUGGUGGCUUUUACUUUGUUCUUGCAUUUCUGAGUACGGGUUAACAUUUAAAGAAUCUACAUUAUAGAUAACAUUUUAUUGCAAGUAAAUGUAUUUCAAAAUUUGUUAUUGGUUUUGUAUGAGAUUAUUCUCAGCCUACUUCAUUAUCAAGCUAUAUUAUUUUAUUAAUGUAGUUCGAUGAUCUUACAGCAAAGCUGAAAGCUGUAUCUUCAAAAUAUGUCUAUUUGACUAAAAAGAAGUUAUUCAACAGGAGUUAUUAUCUAUGAAAAAAAUACAACAGGAAUAUAAAAAACUUGAAGAGGAUAAGAAGAUGUUGGAAAAAGUAAUAUUAAAUCUUAAAAAACAUAUGGAAAGUACACAUUGGUGAAGACACAUUGGUGAAGUACAAAAAUAUAAAUUGGAUCUAGAAGAAAGGGCAAUUCAGGCAAUAGAAAAAUUAGUAGAAAUCCCUUUAAAGGUUAGUUUGUAAAAUCAGGUAAGUUUAUUUAUAAUUUGCUUUCAUUUAUUUCACUGCAAAUUAUAUUUUGGAUAUAUAUAUAUAUUGUGCUUCCUCUGCCUGUCUUACAGCAAUUUGCCUUGCAGAGUUCUAGGAAAAAGGUGGCAUGUGUUUUUACUUUCAAAUAUUUAAAUUUCCAUCAUUCUAACAAAAUCAAUUUUUCAGAGUAAUGAUUCUCACUGUGGAGUCAUUUGAUUAUUAAGACCCGUUGGCAUAAGAUUACAUCCUCUGACUAUAAAAAUCCUGGAAGAAAACCUAGGAAAUAUUCGUCUGGACUUUGCACUUGGCAAUGAAUUUAUGGGCGCUUUGGAAUCCUGCAGAUAUAAUAAUGAUAAUUAAACAAAACACUCAGAGAAACUGCCAACCCUAGGAUGAAGUAUAUUGUUACUGUGCUUUGGGAUUAAAAUAAGUAACUACAGUUUAUAGAACUUUUAUACUGAUACACAGACACUAAAAAGGGAAAGGGUUUAGAUGAGAAGCUCUGCUGUGCAAUCAAGAAUCUCAGCCACUCAUUUCUGUAGGGGCUGCAGGAGCUCCCUGUAAAGAGAGGUUAUGGAGUCUGUAGCUUCAGGUAACCACUGAUCCACUUCCAGUCACUAUCCAUGAGUUUUUAUUUCCAAAUACAUGAAAUCAUAUGAAUUUCUGGUUUUUCCUGUUGGAGCCCAAGGAGCAAGGGCAGAAUGAGGAACAUGAUGUUUCUUACCGACAGUUACUCAUGACGUCUCCAUCCAGGACUGAGGGGGGCAUCCUUCUCCAUCUAGGACUGGGGGCAUCCUUCUCCAUCCAGUAUUGGGGGUCUUCCUCCUCCAUCCAGGACUUGGGGGUCAUCCUCCUCCAUCCAGGACCUGAGGGGUGUCCUUUUCUGCGCUUCCUUGGAUGGCAGUCUUUCCCUUCAUGUUUAUAGUGACUUACCAUUAAAUCACUGUGCCGUUUUUUCCUAAAA

Taxonomic tree

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Publications