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Homo sapiens (human) firre intergenic repeating RNA element (FIRRE) URS00002F3F76_9606

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FIRRE: FIRRE is a long non-coding RNA (lncRNA) that has been implicated in various biological processes and diseases, including hepatocellular carcinoma (HCC) [PMC8176253]. However, modulating FIRRE levels did not affect the expression of PKM2 mRNA in HCC cells [PMC8176253]. FIRRE has been shown to interact with miR-520a-3p and stabilize BECN1 mRNA, contributing to autophagy [PMC8219055] [PMC8811066]. The interaction between FIRRE and PTBP1 protein has been implicated in the oncogenic role of FIRRE in colorectal cancer (CRC) [PMC8811066]. Additionally, nucleosome-free regions adjacent to the triplex forming region of FIRRE and TPD52L1 have been identified, suggesting the potential for triplex formation [PMC8136789]. FIRRE is significantly upregulated in gallbladder cancer (GBC) tissues compared to adjacent non-cancer tissues [PMC8219055]. However, there have been few studies investigating the effects of FIRRE on cancers overall [PMC8811066]. The FIRRE locus on the inactive X chromosome (Xi) is located adjacent to the nucleolus and may help maintain its heterochromatic state [PMC7724472] [PMC5627159]. Functional studies have utilized a FIRRE knockout mouse model and demonstrated its role in hematopoiesis and gene expression regulation during inflammatory responses [PMC6853988] [PMC7695720]. In conclusion, FIRRE is a lncRNA that plays diverse roles in various biological processes and diseases. Further research is needed to fully understand its mechanisms of action.

Genome locations

Gene Ontology annotations

Localisation

Sequence

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GACACGUGGUGCCUUCAGGCUCUGGGGCCUAGGACCUUUGUGGUAGCAGAGUCACUGCAGAGAACCAGACAAUACCAGGUUGCUUAUAAAAGGAUGCCAUGUGCUUGCUGGAGGUCCCAGGUGCAACCAAAUUGCUUGCAGCUAGGAGGACCUUGAAGAGAAAUGGGAUCAGCCCGCCAAACCAAGAAGGGUUAGCACUUUUGCUAGGAGAGCUGACCACGCACAAACAGAUGAGAACCAAAACCGAGUGAAGAGGAUUGAAGAUGAACCCACAUUUUAAAAGUUCUUGUCUGCUGGAGGUGGCAUUACCUGUGACCUCGCUUCACUUCUCCAUACAUGGCUGUUAUAGCAGAAAAUCCAGCUUUCUGAAGCAUAUUUCACGACAUAUGAUGAGACUUAUGUGAUGUGAGACCUGAGAAAACUAUGAUAGAAAGAAGCAACUCAAGUUGCAAGGAUAUUCCUCAUGUAUCAUGCAAGGAUAUUCCUCAUAUAUCAUGCUUUUUCUAUCUUCUGCUCUUUGCCACCUGUGAGGUCCCUGAAAAUGAAGGCCAAUACUACCCAGAUUUGAAUAUUCUAAGAGAUUUCUCAAAAAGCUGAUAUUCAUAAUUUGAGAAGCAAUCAAGAACAAACGUGUACUGAAACAGUUGGUGCAAAAUCCUUAUUGACCACAGAUGGAAUUCAGUAAUUUAUAUUUCUUCGAAACAUAGAAAAACGGAAUACUGAGAUCUGGUGGGGGGCCGGCGGCAGUCUGGGAGCGGCGCGCCAUGUACACCAUCAUCAACGGGCCCAGCAAGUUGGUCGCGCAGCGCCGCACAGGUCUCACGCAGCAGCAGGUGAAGGGCCAGCUCCAGGAGCUCCUGAAAAGCCGGCAGCCCGCGCCGCCGACCUUGCAGCCCCAGCGGGCGCAGCCCUUCGCGCAGCCGCUGGGACCCUGGCCCCUGUCGAGUGCAGGGCCAAGGCUUGUGUUCAAUCGUGUGAAUCGCCGGCGGGACCCCUCCAAGUCCCCAUCCCUCCAGGGGACCCAGGAGACCUACACACUGGCCCACAAGGAGAAUGUCCGCUUUGUGUCCGAAGCCUGGCAGCAGAGACUAAGGUGUCAGUAUGUUCUUCAAGCUGCUCUGCUCCUGGGCCCAAGCUAUUCUCCUGCCUCAGCCUUCCAAGAAGCUGAAACUACAAGAACACAAGACUGUACCUGGCUUGCAAACACCAUUGCUAAUAAGAAGAUAUUACAUGGAUCCCUGAGGUCGGUCCCCAAUACGACAAGACAAUUUGAUAUCAUAAUAGAACACUGCAGAAACAAUGCUGAGUGAAGAAGAGUAGAAAUGGGAAGACUUGGUUGAGCGGAAACUGAGUUCUUGAAAAGAGGAGAUGCUUGAUGAGGGCAUGGAUCCCUGAGGUCUGCCCCAGUACUAUAAGACAAUUUGAUGUAAGAAAACACAGCAGAUAUAAUACUGAGUGAAGAAGAGUAUAAAUGAGAAGAUUGGUUGUGCAGAUACUGAGUUCAUGAAAAGAGGAGAUGAUUGAUGAGGCCAGGUGCGGUGACUCAUGCCUGUAAUCCCUGCACUUUGGGAGGCUGCGGCGGGCGGAUCACCUGAGGUCAGGAGUUCGAGACCAGCCUGGGAGACAGAGCAUGGAAACCUAAGGUCUGUACCCAAAACUACAGGACUAUUUGACAUCAUAAUAAAACACUGCAGAUAUGAUGCUGAGUAAGAGUAGAAAUGGGAAGACUUGGUUGUGCAGUAACUGAGUUCUUGAAAAGAGGAGAUGCUUGAUGAGGGCAUGGAUCACUAAGGUCUGUUCCCAAUACAAGAAGACUCUUUGACAUCAUAAUAAAAUACUGCAGAUACGAUGCUGAGUGAAAAAGAGUAGAAAUGGGAAGACUUGGUUGUGCAGAAACUGAGUUCUUAAAGAGAGGAGAUACUUUAUGAGGGCUGGAGUGCACUGGAGCAAUCCUGGCUGGCCAAUACUGAGUUCUUGAAAACAGGAGAUGCUUGAUGAGGAUGGGAUCAUCUAGUUGCAGGAAAACAAGGCUCAGGGUGCCUACUGAUUCUACAUUAUGCUUGGUCCGGAGAGCUGCCUUGGACUCUCCAAUGCAGCUGCCUCUGUUACCUUGACUCGUCUCAGAUUUCAUUGACCCAAGAUGGGUCCUGGCACUAGGAAUGUAAGACUGUCUCCAUUCUUUUGGCUUGUUCCAGAGAAGCCCAUGCAAGGUUCCUACUGACCAUAUGUUUCUUUCUUUUCUUUUGUUUUUUGAGACGGAGUUUCGCUGUUGUUGCCCAGGCUGGAGUGCAAUGGCGCGAUCUCCGCUCACUGCAACAUCCGCCUCCCGGACUCAAGCGAUUCUCCUGCCUCAGCCUCCCGAGUAGCUGGGAUUACAGGCAUGCGCCACCACGCCCGGCUAAUUUUGUAUUUCUAGUAGAGUUAGAGUUUCUCCAUAUUGGUCAGGCUGGUUUCGAACUCCUGGCCUCAGGUGAUCUGCCCUCCUUGGCCUCCCAAAGCGCUGGGAUUAUAGGCGUGAGCCACCGCCCCCGGCCUUGACCAUAUGUUUUAUUUCUAGCUUUGAUGUCUGGGCAUCGAUUUCCCUCGGUUAAACUAUUUGCUCAAUGUUAAGGCCACUCUGUAGAAAUUUGUCUGUGUAACUGAGGUGCUAUGCAGGCCUGCCUGUGUGACUGUCAUGCAGGCCUGUCUGUGUGAUUGUCAGGGAGAAUUGGUCUGCCACAAUCCUUUUCUAAGCAUAGCCAAUAGAGGUAGUUAGGCAUAAUUUGUAUAUUACAGAAAUUGCCUUACAGAGAGUAACACAUUUCUAUACUCUCCUUCCAUAACAGACACUUAAAAAAACAAAAAAAGUAAUGUAUGCUUGCUGUGGACCUCAUUUAAGAUUGCAACAGAAGCACUUUUCAAUACUAUUAAACAGCUUUUUACUUUCCA

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