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Homo sapiens (human) long intergenic non-protein coding RNA 1239 (LINC01239) URS00000E9163_9606

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LINC01239: LINC01239 is a long noncoding RNA (lncRNA) that has been found to be significantly upregulated in pancreatic ductal adenocarcinoma (PDAC) tissues compared to adjacent normal tissues [PMC9218654]. It is located in the flanking region of a deletion that includes the genes CDKN2A, CDKN2B, and MTAP, which show decreased expression in PDAC [PMC9218654]. While the carcinogenic role of MIR31HG, another lncRNA, has been well-documented in various solid tumors including PDAC, the effects of LINC01239 have been less studied [PMC9218654]. Interestingly, LINC01239 has been found to be dysregulated in both systemic lupus erythematosus (SLE) patients and women with high-risk pregnancies [PMC9917164]. It has also been associated with the risk of certain types of cancer and genetic diseases [PMC9917164]. LINC01239 is one of the top copy number variants found in both mesothelioma and pancreatic cancer [PMC7169466]. In glioblastoma multiforme (GBM), expression changes in LINC01239 have been observed due to copy number alterations [PMC6827427]. In addition, LINC01239 interacts with IPO5 and FN1, along with other lncRNAs such as LINC00987 and LINC01484 [PMC10116350]. Overall, while MIR31HG has been extensively studied for its carcinogenic role, further research is needed to fully understand the functions and implications of LINC01239.

Genome locations

Gene Ontology annotations

Sequence

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CUUUUAUUUUCUGUUCCUCUAAGGGAAGAGAGACCAAAGAGAAUUCUACUUUGACCCUGGCUUAAGAGUGGAACAUAGAUGUCUAUAAAACUAUGUGGUACCAGCAUGUUAUGAAGAAUAAGCAAGAAGAAAGAGAAGGAGAAGAAGCAGGAGGAGGAGGAGAGAAGGAAAGGGAGGAGGAGGAGGAGAAAAAGAUGGUGGUAGAGGAGGAGGAGAAGAAGAAGAAGGAGGAGAAGGAGAAGGAGAAGAAGGAGCAGGAGGAGGAGGAAGAAGAAGAAGAGGAGAAGGGAACUCACAUGCUACCUGUGUGAGUCACAUGUCAGUGCAAUUUCUGGAGGUCAAUUGUAGCCCUGAAGUCUCAGAACAAUGGCAAAAAGAAAUACGGAGGGCAUGAUACAUUUGGCAGACUAAAAUUCUCAAGAUUCCUAUGCAGUCGAGUUUUACCAUAUGACUGAGUUCCAACAAAGAAAUAUGAGUAGAAGAUUGUAUAAGCAUCAUUUUUGACCCAGGGCUUUAAGAAGCAGACUAUGGAAAUGAUGUUAGACAAAAAGCAAAUUUGAGCAAUUUUGUUAUUCGGGUUCAAAAUGGGUCGUAAAGCAGCAGAGACAACUCUCAAAACAUCAGCAACACAUUUGGCGCGGGAACUGCUAAUGAACGUACAGUGGAGUGGUGGUUCAAGAAGUUUUGCGAAGGAAACGAGAGGCUUGAAGACGAAGAGUGUAGUGGCCAGCCAUUGGAAGUAGACAACGACAAAUUGAGAGCAAUCAUUGAAGCUGAUCCUCUUACAACUACAGGAGAAGUUGCCAAGGAACUCACCAUCAAUCAUUCUAUAGUAGUUUGGCAUUUGAAGCAGAUCGGAAAGGUGAAAAAGCUUGAUAAGUGAAUGCCUCAUGAACAGAGCAAAAAUUUUAAAACAUUGUUGUUUUGAAGUGACGUCUUCUCUUAUUUUACACAACAAUGAACCAUUUCUGGAUCGAAUUAUGACAUGUGAUGAAAAGUGGAUUUUAUAUGACAAGCUGCAAAAACCAGCUCAGUGGUUGGAUGGAGAAGAAGCUUCAAAGCACUUCCCAAAGCUGAACUUGCACCAACAAAAGCUCAUGGUCACAAUUUGGUGGUCUGCCGCCAGCCUGAUCUACUACAGCUUUCGGAAUCCCAGCGAAACCAUUAUGUCUGAGAAAUAUGCUCAGCAAAUCGAUGAGAUGUGCCAAAAACUUCAAGGCCUGCAGCCGGCAUUGGUCAACCAAAAGGAUCCAAUUCUUCUCUACCACAACGCCUGACCACAUGUCACAUAACCAACCCUUCAAAAGUUGAAUAAAUUGGUCUACAAAAUUGCCUUAUCUGCCAUAUUCACCUGACCUCUCACCAACCAACUACCACUUCUUCAGUUUGUCUCUUCCAGAAUCAAAGCUAUAAAACUACAAAUGGUUCUCCAAAUGGAGCCCCAGAUGCAGUCCAUGACUAAGAUCUACUGCGGACCUCUGGACCGGCCUGCUAGCCCAGCUCCCACAUUAAUGACAUCAAAGGCACCCCUCCCGAGGAAAUCUCAACUGCAUGACACCUACUACGCCCCAAUUCAGCAGGAAGCAGUUAGAGUGGUCGUUGGCCAACCUCCCCAACAGCACUUGGGUUUUCUGUUGAGAUGGGGGACUGAGAGACAGGACUAGCUGGAUUUCCUAGGCCAACUAAGAAUCCCUAAGCCUAGCUGGGAAGGUGACUACACCCACCUUUAACCACUAGGCUUGCAACUUAGCUCACACCCGACCAAUCAGGUAGUAAAGAGAGCUUGCUAAAAUGCUAAUUAGGCAAAAACAGGAGGUAAAGAAAUAGCCAGUCAUCUAUCGCCUGACAGCACAAGGGGCGGGACAAUGAUCAGGAUAUAAACUCAGGCAUUCAAGCCAGCAAUGGCUACCCACUUUGGGUCCCCUCCCAUUUUAUGGGAGCUCUGUUUUCACUCUAUUAAAUCUUUCAACUACCAAAAAAAAAAAAAAAGAAAAGAAAAACAAUUAACUUUUUUAUAUAUCAGUUAAAUUCAUCCAUGAUGUUUUUUAUGUUUUCUGUAUUCUUACUGGUCAUUUUUCUAUUUGUUCUAUCAAGUAUCCAGGAAUAUGUGUUAAAGAUGUCCACUUCAAUUGUGAAUUUCUUGAGUUGUUCUUUCAGUUUUGUUCUUUUUUUACCUUAUGCAUUUUGAAGUUGUAUUAUUUCCUGCAUACAAAUGUAGAAUUGUGGUGUCAUUCUUUUGGAGUAAACCAUGAUCAUUACUGGCAUGACUUACUUACUUACUAUCUAUCUAGACAUGUUGAUUGCUUCAAUUUCUACUUUAAUCUUAAUAAAAAUACACCAACUUUUU

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Publications